UHGV-0066878

Genome information

Genome length 31,784 bps

CDS count 47

Completeness 91.73% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0066878
vOTU ID	vOTU-060150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_77596
BioSample	SAMEA2338768
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.13
Jumbo phage	No

Genome content
Genome length	31,784 bps
GC content	42.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.09%
Average CDS length	633.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0066878_1	PHROG	phrog_9994	NA	unknown function
UHGV-0066878_1	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0066878_1	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0066878_1	Pfam	PF21454	Major structural protein 1, jelly-roll domain	MSP1_barrel
UHGV-0066878_1	Structural annotation	PF20747	NA	NA
UHGV-0066878_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0066878_2	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0066878_2	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0066878_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0066878_2	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0066878_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0066878_3	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0066878_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0066878_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0066878_4	UniRef90	UniRef90_A0A374BV79	PhageMin_Tail domain-containing protein	NA
UHGV-0066878_4	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0066878_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0066878_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0066878_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0066878_5	PHROG	phrog_706	NA	unknown function
UHGV-0066878_5	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0066878_5	eggNOG-mapper	1234679.BN424_2615	Bacteriophage Gp15 protein	NA
UHGV-0066878_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0066878_5	Structural annotation	PF06854	NA	NA
UHGV-0066878_6	Structural annotation	PF10666	NA	NA
UHGV-0066878_7	PHROG	phrog_820	major tail protein	tail
UHGV-0066878_7	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0066878_7	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0066878_7	COG	COG5492	NA	NA
UHGV-0066878_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0066878_8	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0066878_8	Structural annotation	PF12691	NA	NA
UHGV-0066878_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0066878_9	UniRef90	UniRef90_UPI00082D57A1	minor capsid protein	NA
UHGV-0066878_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0066878_9	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0066878_10	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0066878_10	UniRef90	UniRef90_UPI0003FC0B4B	putative minor capsid protein	NA
UHGV-0066878_10	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0066878_10	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0066878_10	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0066878_10	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0066878_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0066878_11	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0066878_11	eggNOG-mapper	665959.HMPREF1013_00198	NA	NA
UHGV-0066878_12	PHROG	phrog_267	major head protein	head and packaging
UHGV-0066878_12	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0066878_12	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0066878_12	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0066878_12	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0066878_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0066878_14	KOfam	K07584	NA	NA
UHGV-0066878_14	PHROG	phrog_4478	peptidase	other
UHGV-0066878_14	UniRef90	UniRef90_A0A3E4ME95	Ribosomal-processing cysteine protease Prp	NA
UHGV-0066878_14	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0066878_14	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0066878_14	COG	COG2868	NA	NA
UHGV-0066878_14	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0066878_15	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0066878_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0066878_16	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0066878_16	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0066878_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0066878_16	COG	COG2369	NA	NA
UHGV-0066878_16	Structural annotation	PF06152	NA	NA
UHGV-0066878_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0066878_17	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0066878_17	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0066878_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0066878_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0066878_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0066878_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0066878_18	UniRef90	UniRef90_A0A395YD55	PBSX family phage terminase large subunit	NA
UHGV-0066878_18	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0066878_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0066878_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0066878_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0066878_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0066878_19	PHROG	phrog_2412	NA	unknown function
UHGV-0066878_19	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0066878_19	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0066878_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0066878_20	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0066878_20	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0066878_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0066878_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0066878_20	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0066878_23	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0066878_23	UniRef90	UniRef90_W1I6Y1	Uncultured bacterium extrachromosomal DNA RGI01389	NA
UHGV-0066878_23	eggNOG-mapper	411461.DORFOR_01154	COG NOG12663 non supervised orthologous group	NA
UHGV-0066878_23	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0066878_24	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0066878_25	eggNOG-mapper	411462.DORLON_00805	NA	NA
UHGV-0066878_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0066878_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0066878_26	UniRef90	UniRef90_A6BET6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0066878_26	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0066878_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0066878_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0066878_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0066878_27	PHROG	phrog_16687	NA	unknown function
UHGV-0066878_28	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0066878_28	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0066878_28	UniRef90	UniRef90_A6BET8	Primase C terminal 2 (PriCT-2)	NA
UHGV-0066878_28	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-0066878_28	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0066878_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0066878_28	COG	COG3598	RecA-family ATPase	NA
UHGV-0066878_28	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0066878_29	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0066878_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0066878_29	UniRef90	UniRef90_R6SHV8	Helicase C-terminal domain protein	NA
UHGV-0066878_29	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-0066878_29	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0066878_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0066878_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0066878_29	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0066878_29	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0066878_30	PHROG	phrog_2698	NA	unknown function
UHGV-0066878_30	UniRef90	UniRef90_D9R8Z5	NA	NA
UHGV-0066878_30	eggNOG-mapper	411462.DORLON_00810	NA	NA
UHGV-0066878_30	Structural annotation	PF05037	NA	NA
UHGV-0066878_31	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0066878_31	UniRef90	UniRef90_UPI001E57C8F5	ATP-binding protein	NA
UHGV-0066878_31	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0066878_31	Pfam	PF13479	AAA domain	AAA_24
UHGV-0066878_31	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0066878_32	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0066878_32	PHROG	phrog_1499	NA	unknown function
UHGV-0066878_32	UniRef90	UniRef90_R6SEG3	RecF/RecN/SMC N-terminal domain protein	NA
UHGV-0066878_32	eggNOG-mapper	411462.DORLON_00812	AAA ATPase domain	NA
UHGV-0066878_32	Pfam	PF13476	AAA domain	AAA_23
UHGV-0066878_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0066878_32	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0066878_34	eggNOG-mapper	742765.HMPREF9457_02102	NA	NA
UHGV-0066878_35	PHROG	phrog_32342	NA	unknown function
UHGV-0066878_37	Structural annotation	PF10743, NF040990	NA	NA
UHGV-0066878_39	PHROG	phrog_32168	NA	unknown function
UHGV-0066878_39	Structural annotation	PF13248, MF_00788, NF041910, COG1552	NA	NA
UHGV-0066878_42	UniRef90	UniRef90_R6SPV6	DNA binding domain excisionase family	NA
UHGV-0066878_42	eggNOG-mapper	610130.Closa_1362	Helix-turn-helix domain	NA
UHGV-0066878_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0066878_42	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0066878_42	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0066878_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0066878_43	UniRef90	UniRef90_R6SHW8	Helix-turn-helix	NA
UHGV-0066878_43	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0066878_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0066878_43	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0066878_43	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0066878_44	PHROG	phrog_87	metallo-protease	other
UHGV-0066878_44	UniRef90	UniRef90_A0A1C5SMT9	Metallopeptidase immA	NA
UHGV-0066878_44	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0066878_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0066878_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0066878_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0066878_45	UniRef90	UniRef90_R6SEH3	TPR Domain containing protein	NA
UHGV-0066878_45	eggNOG-mapper	1120746.CCNL01000013_gene1996	NA	NA
UHGV-0066878_45	Pfam	PF14559	Tetratricopeptide repeat	TPR_19
UHGV-0066878_45	Structural annotation	PF18768, MF_00994, NF008756, COG5010	NA	NA
UHGV-0066878_46	KOfam	K14059	int; integrase	NA
UHGV-0066878_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0066878_46	UniRef90	UniRef90_R6SPW0	Tyr recombinase domain-containing protein	NA
UHGV-0066878_46	eggNOG-mapper	1235798.C817_04751	Belongs to the 'phage' integrase family	NA
UHGV-0066878_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0066878_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0066878_46	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0066878_47	KOfam	K06407	spoVAE; stage V sporulation protein AE	NA
UHGV-0066878_47	UniRef90	UniRef90_A0A412EXR3	SpoVA protein	NA
UHGV-0066878_47	eggNOG-mapper	411461.DORFOR_01378	SpoVAC/SpoVAEB sporulation membrane protein	NA
UHGV-0066878_47	Pfam	PF03862	SpoVAC/SpoVAEB sporulation membrane protein	SpoVAC_SpoVAEB
UHGV-0066878_47	NCBIFam	TIGR02839.1	stage V sporulation protein AE	NA