UHGV-0067053

Genome information

Genome length 38,312 bps

CDS count 61

Completeness 96.23% (high-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067053
vOTU ID	vOTU-074402
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_79124
BioSample	SAMEA2338867
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.19
Jumbo phage	No

Genome content
Genome length	38,312 bps
GC content	46.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.29%
Average CDS length	578.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067053_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0067053_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0067053_1	UniRef90	UniRef90_A0A352UR58	XRE family transcriptional regulator	NA
UHGV-0067053_1	eggNOG-mapper	742738.HMPREF9460_00775	Peptidase S24-like	NA
UHGV-0067053_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067053_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0067053_2	UniRef90	UniRef90_A0A833M8R5	Helix-turn-helix transcriptional regulator	NA
UHGV-0067053_2	Pfam	PF05339	NA	DUF739
UHGV-0067053_2	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0067053_6	PHROG	phrog_3634	NA	unknown function
UHGV-0067053_6	eggNOG-mapper	1458275.AZ34_07195	phosphatase homologous to the C-terminal domain of histone macroH2A1	NA
UHGV-0067053_6	PADLOC	Effector_00071	TIR	CBASS
UHGV-0067053_6	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-0067053_14	Structural annotation	PF01381, NF041575, COG1476	NA	NA
UHGV-0067053_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0067053_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0067053_15	UniRef90	UniRef90_A0A350TVJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0067053_15	eggNOG-mapper	290402.Cbei_1615	transcriptional regulator	NA
UHGV-0067053_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067053_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0067053_16	Structural annotation	PF01381, NF041575, COG1476	NA	NA
UHGV-0067053_17	PHROG	phrog_7445	NA	unknown function
UHGV-0067053_17	UniRef90	UniRef90_UPI000FD875FF	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0067053_17	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0067053_17	Structural annotation	PF14058	NA	NA
UHGV-0067053_18	PHROG	phrog_8470	NA	unknown function
UHGV-0067053_18	UniRef90	UniRef90_UPI001875A728	PcfJ domain-containing protein	NA
UHGV-0067053_18	eggNOG-mapper	1157490.EL26_01845	PcfJ-like protein	NA
UHGV-0067053_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0067053_18	Structural annotation	PF14284	NA	NA
UHGV-0067053_19	PHROG	phrog_15609	NA	unknown function
UHGV-0067053_19	UniRef90	UniRef90_UPI001875FF23	NA	NA
UHGV-0067053_19	eggNOG-mapper	1007096.BAGW01000031_gene118	NA	NA
UHGV-0067053_19	Pfam	PF11300	NA	DUF3102
UHGV-0067053_19	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0067053_19	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0067053_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0067053_21	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0067053_21	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-0067053_21	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0067053_22	PHROG	phrog_7566	NA	unknown function
UHGV-0067053_22	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0067053_24	eggNOG-mapper	1280685.AUKC01000081_gene1299	Single-strand binding protein family	NA
UHGV-0067053_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0067053_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0067053_25	PHROG	phrog_10714	NA	unknown function
UHGV-0067053_25	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0067053_25	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0067053_26	eggNOG-mapper	246199.CUS_4371	NA	NA
UHGV-0067053_27	PHROG	phrog_874	NA	unknown function
UHGV-0067053_27	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0067053_27	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0067053_27	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0067053_28	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0067053_29	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0067053_30	PHROG	phrog_11237	NA	unknown function
UHGV-0067053_30	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0067053_31	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-0067053_31	eggNOG-mapper	1280673.AUJJ01000020_gene1343	Nucleotidyltransferase domain	NA
UHGV-0067053_31	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0067053_31	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0067053_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067053_34	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0067053_34	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0067053_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0067053_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0067053_35	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0067053_35	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0067053_35	eggNOG-mapper	1415774.U728_1256	NA	NA
UHGV-0067053_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0067053_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0067053_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0067053_36	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0067053_36	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0067053_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0067053_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0067053_36	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0067053_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0067053_37	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0067053_37	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0067053_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0067053_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0067053_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0067053_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0067053_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0067053_38	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0067053_38	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0067053_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0067053_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0067053_38	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0067053_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0067053_39	UniRef90	UniRef90_A0A1Y4BVI1	Phage major capsid protein	NA
UHGV-0067053_39	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0067053_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0067053_39	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0067053_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0067053_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0067053_39	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0067053_40	PHROG	phrog_749	NA	unknown function
UHGV-0067053_40	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0067053_40	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0067053_41	PHROG	phrog_19734	NA	unknown function
UHGV-0067053_41	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0067053_41	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0067053_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0067053_42	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0067053_42	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0067053_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0067053_43	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0067053_43	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0067053_43	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0067053_43	Structural annotation	TIGR01725	NA	NA
UHGV-0067053_44	PHROG	phrog_88	major tail protein	tail
UHGV-0067053_44	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0067053_44	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0067053_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0067053_44	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0067053_46	PHROG	phrog_2115	tail protein	tail
UHGV-0067053_46	eggNOG-mapper	509191.AEDB02000020_gene3251	NA	NA
UHGV-0067053_46	Structural annotation	PF11836	NA	NA
UHGV-0067053_48	PHROG	phrog_8263	NA	unknown function
UHGV-0067053_48	UniRef90	UniRef90_UPI001D063C90	Ltp family lipoprotein	NA
UHGV-0067053_48	eggNOG-mapper	1485543.JMME01000005_gene857	NA	NA
UHGV-0067053_49	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0067053_49	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0067053_49	UniRef90	UniRef90_R9L0T3	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0067053_49	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-0067053_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0067053_49	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0067053_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0067053_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0067053_50	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0067053_50	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0067053_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0067053_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0067053_50	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0067053_51	PHROG	phrog_3639	minor tail protein	tail
UHGV-0067053_51	UniRef90	UniRef90_A0A396NMY3	NA	NA
UHGV-0067053_51	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0067053_51	COG	COG5434	Polygalacturonase	NA
UHGV-0067053_51	Structural annotation	PF10651, PF05475, NF033675, COG4935	NA	NA
UHGV-0067053_53	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0067053_54	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0067053_54	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0067053_54	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0067053_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0067053_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0067053_54	COG	COG4926	Phage-related protein	NA
UHGV-0067053_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0067053_55	PHROG	phrog_937	hemolysin	other
UHGV-0067053_55	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0067053_57	PHROG	phrog_13256	NA	unknown function
UHGV-0067053_57	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0067053_58	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0067053_58	PHROG	phrog_3513	endolysin	lysis
UHGV-0067053_58	UniRef90	UniRef90_A0A396P8X6	LYZ2 domain-containing protein	NA
UHGV-0067053_58	eggNOG-mapper	1341157.RF007C_12385	mannosyl-glycoprotein	NA
UHGV-0067053_58	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0067053_58	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0067053_59	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0067053_59	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0067053_59	UniRef90	UniRef90_A0A396NP33	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0067053_59	eggNOG-mapper	796940.HMPREF9628_01282	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0067053_59	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0067053_59	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0067053_59	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0067053_59	COG	COG0338	DNA-adenine methylase	NA
UHGV-0067053_59	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0067053_61	KOfam	K20974	K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]	NA
UHGV-0067053_61	PHROG	phrog_20458	NA	unknown function
UHGV-0067053_61	UniRef90	UniRef90_A0A350TZJ0	Stage 0 sporulation protein A homolog (Fragment)	NA
UHGV-0067053_61	eggNOG-mapper	457412.RSAG_00853	His Kinase A (phosphoacceptor) domain	NA
UHGV-0067053_61	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0067053_61	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0067053_61	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0067053_61	COG	COG0642	Signal transduction histidine kinase	NA