UHGV-0067075

Genome information

Genome length 34,664 bps

CDS count 46

Completeness 84.12% (medium-quality)

geNomad score 0.9590

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067075
vOTU ID	vOTU-041275
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_104392
BioSample	SAMEA2467034
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9590
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.14
Jumbo phage	No

Genome content
Genome length	34,664 bps
GC content	40.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.03%
Average CDS length	704.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067075_1	PHROG	phrog_10385	NA	unknown function
UHGV-0067075_1	UniRef90	UniRef90_A0A374NCE2	RHS repeat-associated core domain-containing protein	NA
UHGV-0067075_1	eggNOG-mapper	428125.CLOLEP_03379	RHS repeat-associated core domain	NA
UHGV-0067075_1	Pfam	PF05593	RHS Repeat	RHS_repeat
UHGV-0067075_1	NCBIFam	TIGR03696.1	RHS repeat-associated core domain-containing protein	NA
UHGV-0067075_1	COG	COG3209	NA	NA
UHGV-0067075_2	KOfam	K07263	pqqL; zinc protease [EC:3.4.24.-]	NA
UHGV-0067075_2	UniRef90	UniRef90_A0A374FSM7	Insulinase family protein	NA
UHGV-0067075_2	eggNOG-mapper	445971.ANASTE_01625	NA	NA
UHGV-0067075_2	Pfam	PF00675	Insulinase (Peptidase family M16)	Peptidase_M16
UHGV-0067075_2	Pfam	PF05193	Peptidase M16 inactive domain	Peptidase_M16_C
UHGV-0067075_2	COG	COG0612	Predicted Zn-dependent peptidase, M16 family	NA
UHGV-0067075_3	Pfam	PF05593	RHS Repeat	RHS_repeat
UHGV-0067075_3	NCBIFam	TIGR01643.1	YD repeat-containing protein	NA
UHGV-0067075_3	COG	COG3209	NA	NA
UHGV-0067075_4	PHROG	phrog_10385	NA	unknown function
UHGV-0067075_4	UniRef90	UniRef90_A0A2N0UYV6	Cell wall-associated polypeptide	NA
UHGV-0067075_4	eggNOG-mapper	1262449.CP6013_0695	TIGRFAM RHS repeat-associated core domain-containing protein	NA
UHGV-0067075_4	NCBIFam	TIGR03696.1	RHS repeat-associated core domain-containing protein	NA
UHGV-0067075_4	COG	COG3209	NA	NA
UHGV-0067075_6	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0067075_6	PHROG	phrog_2713	NA	unknown function
UHGV-0067075_6	UniRef90	UniRef90_B0MMK0	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0067075_6	eggNOG-mapper	1235792.C808_03518	HsdM N-terminal domain	NA
UHGV-0067075_6	PADLOC	MTase_I_00018	Type I methyltransferase	RM
UHGV-0067075_6	Pfam	PF12161	HsdM N-terminal domain	HsdM_N
UHGV-0067075_6	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0067075_6	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0067075_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0067075_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0067075_7	UniRef90	UniRef90_A0A1C6I863	HTH-type transcriptional regulator immR	NA
UHGV-0067075_7	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0067075_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0067075_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067075_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0067075_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0067075_7	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF041951, COG1396, COG1974	NA	NA
UHGV-0067075_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0067075_8	UniRef90	UniRef90_A0A1C6I6F2	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-0067075_8	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0067075_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067075_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0067075_8	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0067075_12	PHROG	phrog_310	transposase	integration and excision
UHGV-0067075_12	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-0067075_12	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-0067075_12	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0067075_12	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0067075_12	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0067075_12	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0067075_12	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0067075_13	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0067075_13	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0067075_13	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-0067075_13	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0067075_13	Pfam	PF13401	AAA domain	AAA_22
UHGV-0067075_13	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0067075_13	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0067075_15	PHROG	phrog_5671	NA	unknown function
UHGV-0067075_15	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-0067075_17	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0067075_17	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0067075_17	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0067075_17	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-0067075_17	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0067075_17	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0067075_17	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0067075_18	eggNOG-mapper	645991.Sgly_0760	NA	NA
UHGV-0067075_19	PHROG	phrog_286	NA	unknown function
UHGV-0067075_19	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0067075_19	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-0067075_19	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0067075_19	Structural annotation	PF06252	NA	NA
UHGV-0067075_20	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0067075_20	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-0067075_20	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-0067075_20	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0067075_20	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0067075_20	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0067075_21	PHROG	phrog_462	lipoprotein	other
UHGV-0067075_22	PHROG	phrog_25462	NA	unknown function
UHGV-0067075_22	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-0067075_22	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0067075_22	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0067075_23	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0067075_23	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0067075_23	eggNOG-mapper	742733.HMPREF9469_02884	NA	NA
UHGV-0067075_23	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0067075_23	Structural annotation	PF11985	NA	NA
UHGV-0067075_24	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0067075_24	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0067075_24	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0067075_24	eggNOG-mapper	742733.HMPREF9469_03780	Transcription termination factor nusG	NA
UHGV-0067075_24	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0067075_24	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0067075_24	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0067075_25	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0067075_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0067075_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0067075_26	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-0067075_26	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0067075_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0067075_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0067075_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0067075_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0067075_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0067075_27	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-0067075_27	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0067075_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0067075_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0067075_28	UniRef90	UniRef90_A0A1C6IA10	Phage minor capsid protein 2	NA
UHGV-0067075_28	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0067075_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0067075_28	COG	COG2369	NA	NA
UHGV-0067075_28	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0067075_29	eggNOG-mapper	663278.Ethha_0498	NA	NA
UHGV-0067075_30	PHROG	phrog_419	NA	unknown function
UHGV-0067075_30	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0067075_30	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0067075_30	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-0067075_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0067075_31	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-0067075_31	eggNOG-mapper	1123511.KB905868_gene182	Phage minor structural protein GP20	NA
UHGV-0067075_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0067075_31	Structural annotation	PF06810	NA	NA
UHGV-0067075_32	PHROG	phrog_212	major head protein	head and packaging
UHGV-0067075_32	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-0067075_32	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0067075_32	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0067075_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0067075_33	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0067075_34	PHROG	phrog_3366	NA	unknown function
UHGV-0067075_34	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-0067075_34	Pfam	PF20536	NA	DUF6751
UHGV-0067075_34	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0067075_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0067075_35	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0067075_35	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0067075_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0067075_35	Structural annotation	PF11114	NA	NA
UHGV-0067075_36	PHROG	phrog_3266	tail completion	connector
UHGV-0067075_36	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0067075_36	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0067075_36	Structural annotation	PF12691	NA	NA
UHGV-0067075_37	PHROG	phrog_3099	NA	unknown function
UHGV-0067075_37	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0067075_37	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0067075_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0067075_38	PHROG	phrog_4450	NA	unknown function
UHGV-0067075_38	UniRef90	UniRef90_A0A373KZ30	AP endonuclease	NA
UHGV-0067075_38	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0067075_38	Pfam	PF20378	NA	DUF6673
UHGV-0067075_38	Structural annotation	PF20378	NA	NA
UHGV-0067075_39	PHROG	phrog_706	NA	unknown function
UHGV-0067075_39	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0067075_39	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0067075_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0067075_39	Structural annotation	PF06854	NA	NA
UHGV-0067075_40	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-0067075_41	PHROG	phrog_19074	NA	unknown function
UHGV-0067075_41	UniRef90	UniRef90_A0A413QHE6	Phage tail tape measure protein	NA
UHGV-0067075_41	eggNOG-mapper	536233.CLO_2822	Phage tail tape measure protein, TP901 family	NA
UHGV-0067075_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0067075_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0067075_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0067075_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0067075_42	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0067075_42	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-0067075_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0067075_42	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0067075_43	PHROG	phrog_18110	NA	unknown function
UHGV-0067075_43	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0067075_43	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0067075_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0067075_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0067075_43	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0067075_43	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0067075_45	PHROG	phrog_11105	NA	unknown function
UHGV-0067075_46	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0067075_46	Pfam	PF10651	BppU N-terminal domain	BppU_N