UHGV-0067183

Genome information

Genome length 23,834 bps

CDS count 36

Completeness 63.37% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067183
vOTU ID	vOTU-041183
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_78245
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.7
Jumbo phage	No

Genome content
Genome length	23,834 bps
GC content	42.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	91.95%
Average CDS length	613.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067183_1	PHROG	phrog_11354	NA	unknown function
UHGV-0067183_1	UniRef90	UniRef90_A0A7C6S738	DEAD/DEAH box helicase (Fragment)	NA
UHGV-0067183_1	eggNOG-mapper	879308.HMPREF9130_1220	snf2 family	NA
UHGV-0067183_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0067183_2	Structural annotation	MF_00773	NA	NA
UHGV-0067183_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0067183_3	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0067183_3	Structural annotation	PF02996	NA	NA
UHGV-0067183_4	PHROG	phrog_8187	NA	unknown function
UHGV-0067183_4	eggNOG-mapper	411461.DORFOR_00752	NA	NA
UHGV-0067183_4	PADLOC	AbiN	AbiN	Abi
UHGV-0067183_5	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0067183_5	UniRef90	UniRef90_A0A391P905	DNA-binding protein	NA
UHGV-0067183_5	eggNOG-mapper	411461.DORFOR_00751	DNA packaging	NA
UHGV-0067183_5	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0067183_5	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0067183_5	COG	COG5484	NA	NA
UHGV-0067183_5	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0067183_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0067183_6	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0067183_6	UniRef90	UniRef90_B0G3C9	Phage terminase, large subunit, PBSX family	NA
UHGV-0067183_6	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0067183_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0067183_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0067183_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0067183_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0067183_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0067183_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0067183_7	UniRef90	UniRef90_B0G3C8	Phage minor capsid protein	NA
UHGV-0067183_7	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0067183_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0067183_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0067183_8	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0067183_8	UniRef90	UniRef90_A0A1Q6J9C4	Minor capsid protein	NA
UHGV-0067183_8	eggNOG-mapper	411462.DORLON_00794	NA	NA
UHGV-0067183_8	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0067183_8	COG	COG2369	NA	NA
UHGV-0067183_8	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0067183_9	UniRef90	UniRef90_UPI0011C722A7	ribbon-helix-helix domain-containing protein	NA
UHGV-0067183_9	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0067183_9	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0067183_10	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0067183_10	UniRef90	UniRef90_UPI00164A110D	ORF6N domain-containing protein	NA
UHGV-0067183_10	eggNOG-mapper	476272.RUMHYD_02879	ORF6N domain	NA
UHGV-0067183_10	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0067183_10	Structural annotation	PF10543, PF13058, TIGR02681, COG3646, COG2856	NA	NA
UHGV-0067183_11	PHROG	phrog_21033	NA	unknown function
UHGV-0067183_11	UniRef90	UniRef90_UPI0018AA9658	phage minor capsid protein	NA
UHGV-0067183_11	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0067183_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0067183_11	COG	COG2369	NA	NA
UHGV-0067183_12	eggNOG-mapper	411461.DORFOR_00747	NA	NA
UHGV-0067183_13	KOfam	K07584	NA	NA
UHGV-0067183_13	PHROG	phrog_4478	peptidase	other
UHGV-0067183_13	UniRef90	UniRef90_A0A3E5EK56	Ribosomal-processing cysteine protease Prp	NA
UHGV-0067183_13	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0067183_13	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0067183_13	COG	COG2868	NA	NA
UHGV-0067183_13	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0067183_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0067183_14	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0067183_14	AcrCatalog	cluster_74817	NA	NA
UHGV-0067183_14	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0067183_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0067183_15	UniRef90	UniRef90_A6BER6	Putative phage capsid family	NA
UHGV-0067183_15	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0067183_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0067183_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0067183_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0067183_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0067183_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0067183_16	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0067183_17	PHROG	phrog_3366	NA	unknown function
UHGV-0067183_17	eggNOG-mapper	411461.DORFOR_00742	NA	NA
UHGV-0067183_17	Pfam	PF20536	NA	DUF6751
UHGV-0067183_17	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0067183_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0067183_18	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0067183_18	eggNOG-mapper	411461.DORFOR_00741	NA	NA
UHGV-0067183_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0067183_18	Structural annotation	PF11114	NA	NA
UHGV-0067183_19	PHROG	phrog_3266	tail completion	connector
UHGV-0067183_19	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0067183_19	Structural annotation	PF12691	NA	NA
UHGV-0067183_20	PHROG	phrog_3099	NA	unknown function
UHGV-0067183_20	eggNOG-mapper	742765.HMPREF9457_02132	NA	NA
UHGV-0067183_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0067183_21	PHROG	phrog_4450	NA	unknown function
UHGV-0067183_21	eggNOG-mapper	411462.DORLON_00780	NA	NA
UHGV-0067183_21	Pfam	PF20378	NA	DUF6673
UHGV-0067183_21	Structural annotation	PF20378	NA	NA
UHGV-0067183_22	PHROG	phrog_706	NA	unknown function
UHGV-0067183_22	UniRef90	UniRef90_B0G3B6	Bacteriophage Gp15 protein	NA
UHGV-0067183_22	eggNOG-mapper	411461.DORFOR_00737	COG NOG24969 non supervised orthologous group	NA
UHGV-0067183_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0067183_22	Structural annotation	PF06854	NA	NA
UHGV-0067183_23	PHROG	phrog_19074	NA	unknown function
UHGV-0067183_23	UniRef90	UniRef90_A0A3E5GSK9	Phage tail tape measure protein	NA
UHGV-0067183_23	eggNOG-mapper	411462.DORLON_00777	Phage-related minor tail protein	NA
UHGV-0067183_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0067183_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0067183_23	COG	COG5283	Phage-related tail protein	NA
UHGV-0067183_23	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0067183_24	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0067183_24	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0067183_24	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0067183_25	PHROG	phrog_538	minor tail protein	tail
UHGV-0067183_25	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0067183_25	eggNOG-mapper	742765.HMPREF9457_03374	NA	NA
UHGV-0067183_25	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0067183_25	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0067183_26	PHROG	phrog_25635	NA	unknown function
UHGV-0067183_26	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0067183_26	eggNOG-mapper	742765.HMPREF9457_03373	NA	NA
UHGV-0067183_26	Structural annotation	PF20747	NA	NA
UHGV-0067183_27	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0067183_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0067183_27	UniRef90	UniRef90_A0A1C5SV17	Tyrosine recombinase XerD	NA
UHGV-0067183_27	eggNOG-mapper	411461.DORFOR_00731	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0067183_27	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0067183_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0067183_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0067183_27	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0067183_28	PHROG	phrog_12931	NA	unknown function
UHGV-0067183_28	eggNOG-mapper	742765.HMPREF9457_03370	NA	NA
UHGV-0067183_29	eggNOG-mapper	411461.DORFOR_01181	NA	NA
UHGV-0067183_33	PHROG	phrog_4105	NA	unknown function
UHGV-0067183_33	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0067183_34	PHROG	phrog_443	holin	lysis
UHGV-0067183_34	UniRef90	UniRef90_UPI001570A68C	holin	NA
UHGV-0067183_34	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-0067183_34	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0067183_34	Structural annotation	PF16945	NA	NA
UHGV-0067183_35	PHROG	phrog_14030	NA	unknown function
UHGV-0067183_35	UniRef90	UniRef90_G5FC83	SH3b domain-containing protein	NA
UHGV-0067183_35	eggNOG-mapper	411461.DORFOR_00720	NA	NA
UHGV-0067183_35	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-0067183_36	eggNOG-mapper	742765.HMPREF9457_02089	Resolvase, N terminal domain	NA
UHGV-0067183_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA