UHGV-0067186

Genome information

Genome length 30,690 bps

CDS count 49

Completeness 85.55% (medium-quality)

geNomad score 0.9535

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067186
vOTU ID	vOTU-025000
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_78237
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9535
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.06
Jumbo phage	No

Genome content
Genome length	30,690 bps
GC content	38.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.81%
Average CDS length	598.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067186_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0067186_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0067186_1	UniRef90	UniRef90_UPI00096A9788	helix-turn-helix domain-containing protein	NA
UHGV-0067186_1	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0067186_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067186_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0067186_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0067186_1	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0067186_2	UniRef90	UniRef90_A0A412PAU2	XRE family transcriptional regulator	NA
UHGV-0067186_2	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0067186_2	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0067186_2	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0067186_8	PHROG	phrog_2113	NA	unknown function
UHGV-0067186_8	UniRef90	UniRef90_UPI000C85DE39	HTH domain-containing protein	NA
UHGV-0067186_8	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0067186_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0067186_9	UniRef90	UniRef90_UPI000E3E3572	DnaD domain protein	NA
UHGV-0067186_9	eggNOG-mapper	146269.A8YQM0_9CAUD	calcium ion binding	NA
UHGV-0067186_9	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0067186_9	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0067186_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0067186_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0067186_10	UniRef90	UniRef90_H1B475	SF4 helicase domain-containing protein	NA
UHGV-0067186_10	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0067186_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0067186_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0067186_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0067186_12	Structural annotation	PF02768, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0067186_13	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0067186_13	PHROG	phrog_216	integrase	integration and excision
UHGV-0067186_13	UniRef90	UniRef90_G1VXJ6	Tyr recombinase domain-containing protein	NA
UHGV-0067186_13	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0067186_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0067186_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0067186_13	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0067186_14	Structural annotation	PF18358	NA	NA
UHGV-0067186_15	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0067186_15	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0067186_15	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0067186_15	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0067186_16	UniRef90	UniRef90_UPI000EF4F8BA	Lar family restriction alleviation protein	NA
UHGV-0067186_17	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0067186_18	UniRef90	UniRef90_A0A3R6KSP4	YopX domain-containing protein	NA
UHGV-0067186_18	eggNOG-mapper	1235794.C811_01545	NA	NA
UHGV-0067186_20	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0067186_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0067186_22	PHROG	phrog_9107	NA	unknown function
UHGV-0067186_22	eggNOG-mapper	562743.JH976434_gene1036	NA	NA
UHGV-0067186_26	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0067186_26	UniRef90	UniRef90_R7J621	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0067186_26	eggNOG-mapper	1226322.HMPREF1545_02186	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0067186_26	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0067186_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0067186_26	Structural annotation	PF01507, MF_00063, TIGR00268, COG0175	NA	NA
UHGV-0067186_28	Structural annotation	PF04319, TIGR00686	NA	NA
UHGV-0067186_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0067186_29	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0067186_29	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0067186_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067186_31	UniRef90	UniRef90_A0A3E3ADS4	HNH endonuclease	NA
UHGV-0067186_31	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0067186_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0067186_32	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0067186_32	UniRef90	UniRef90_UPI000E41E610	P27 family phage terminase small subunit	NA
UHGV-0067186_32	eggNOG-mapper	1235798.C817_04581	Phage terminase, small subunit	NA
UHGV-0067186_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0067186_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0067186_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0067186_33	UniRef90	UniRef90_UPI001F1BD989	terminase large subunit	NA
UHGV-0067186_33	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-0067186_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0067186_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0067186_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0067186_33	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0067186_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0067186_34	UniRef90	UniRef90_UPI000E3FF410	phage portal protein	NA
UHGV-0067186_34	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0067186_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0067186_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0067186_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0067186_34	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0067186_35	KOfam	K06904	NA	NA
UHGV-0067186_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0067186_35	UniRef90	UniRef90_UPI001D141099	HK97 family phage prohead protease	NA
UHGV-0067186_35	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-0067186_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0067186_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0067186_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0067186_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0067186_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0067186_36	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-0067186_36	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0067186_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0067186_36	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0067186_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0067186_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0067186_36	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0067186_37	PHROG	phrog_2550	NA	unknown function
UHGV-0067186_37	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0067186_37	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0067186_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0067186_38	PHROG	phrog_19734	NA	unknown function
UHGV-0067186_38	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0067186_38	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0067186_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0067186_39	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0067186_39	Structural annotation	PF05657	NA	NA
UHGV-0067186_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0067186_40	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0067186_40	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0067186_40	Structural annotation	TIGR01725	NA	NA
UHGV-0067186_41	PHROG	phrog_88	major tail protein	tail
UHGV-0067186_41	UniRef90	UniRef90_N9WHZ7	Phi13 family phage major tail protein	NA
UHGV-0067186_41	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0067186_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0067186_44	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0067186_44	PHROG	phrog_5218	NA	unknown function
UHGV-0067186_44	UniRef90	UniRef90_N9V933	PhageMin_Tail domain-containing protein	NA
UHGV-0067186_44	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0067186_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0067186_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0067186_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0067186_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0067186_45	UniRef90	UniRef90_UPI001D024C2F	phage tail protein	NA
UHGV-0067186_45	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0067186_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0067186_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0067186_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0067186_46	UniRef90	UniRef90_UPI001D01FD0A	phage tail protein	NA
UHGV-0067186_46	eggNOG-mapper	908340.HMPREF9406_2568	Phage minor structural protein	NA
UHGV-0067186_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0067186_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0067186_46	COG	COG4926	Phage-related protein	NA
UHGV-0067186_47	PHROG	phrog_3267	tail protein	tail
UHGV-0067186_47	UniRef90	UniRef90_R9C033	YkqB	NA
UHGV-0067186_47	eggNOG-mapper	207656.S6BUV4_9CAUD	NA	NA
UHGV-0067186_47	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-0067186_48	PHROG	phrog_2929	tail fiber protein	tail
UHGV-0067186_48	Structural annotation	PF04862, NF033675, COG4935	NA	NA
UHGV-0067186_49	PHROG	phrog_372	tail protein	tail
UHGV-0067186_49	UniRef90	UniRef90_A0A6N8U5G4	Fibronectin type-III domain-containing protein	NA
UHGV-0067186_49	eggNOG-mapper	1540091.A0A0A0RPE7_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0067186_49	Pfam	PF05895	NA	DUF859