UHGV-0067322

Genome information

Genome length 39,754 bps

CDS count 59

Completeness 99.86% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067322
vOTU ID	vOTU-059785
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_89989
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.63
Jumbo phage	No

Genome content
Genome length	39,754 bps
GC content	42.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.01%
Average CDS length	629.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067322_2	UniRef90	UniRef90_UPI001D0A947F	helix-turn-helix transcriptional regulator	NA
UHGV-0067322_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0067322_2	Structural annotation	PF13443, MF_02017, NF041951, COG3655	NA	NA
UHGV-0067322_5	Structural annotation	PF19824, TIGR03090	NA	NA
UHGV-0067322_6	PHROG	phrog_1863	NA	unknown function
UHGV-0067322_7	PHROG	phrog_443	holin	lysis
UHGV-0067322_7	UniRef90	UniRef90_UPI001896A9B9	holin	NA
UHGV-0067322_7	eggNOG-mapper	1125712.HMPREF1316_2355	Putative lactococcus lactis phage r1t holin	NA
UHGV-0067322_7	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0067322_7	Structural annotation	PF16945	NA	NA
UHGV-0067322_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0067322_9	PHROG	phrog_16490	NA	unknown function
UHGV-0067322_9	eggNOG-mapper	1235790.C805_00060	NA	NA
UHGV-0067322_10	PHROG	phrog_22984	NA	unknown function
UHGV-0067322_11	PHROG	phrog_21718	NA	unknown function
UHGV-0067322_11	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-0067322_11	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0067322_13	PHROG	phrog_11037	NA	unknown function
UHGV-0067322_13	UniRef90	UniRef90_UPI001D0AE32A	SH3 domain-containing protein	NA
UHGV-0067322_13	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0067322_13	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0067322_13	Structural annotation	PF08460, PF01551, NF040883, NF033202, COG0739, COG4991	NA	NA
UHGV-0067322_15	Structural annotation	PF05895	NA	NA
UHGV-0067322_16	PHROG	phrog_9534	head protein	head and packaging
UHGV-0067322_16	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0067322_17	PHROG	phrog_538	minor tail protein	tail
UHGV-0067322_17	UniRef90	UniRef90_UPI001D0B76DC	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0067322_17	eggNOG-mapper	428127.EUBDOL_01212	NA	NA
UHGV-0067322_17	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0067322_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0067322_18	PHROG	phrog_36410	NA	unknown function
UHGV-0067322_18	UniRef90	UniRef90_UPI001D0AA3C9	phage tail family protein	NA
UHGV-0067322_18	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0067322_18	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0067322_19	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0067322_19	UniRef90	UniRef90_UPI001D0A3DB9	tape measure protein	NA
UHGV-0067322_19	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0067322_19	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0067322_19	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0067322_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0067322_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0067322_20	PHROG	phrog_706	NA	unknown function
UHGV-0067322_20	UniRef90	UniRef90_UPI001D0AAED0	bacteriophage Gp15 family protein	NA
UHGV-0067322_20	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0067322_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0067322_20	Structural annotation	PF06854	NA	NA
UHGV-0067322_21	Structural annotation	PF10666	NA	NA
UHGV-0067322_22	PHROG	phrog_3099	NA	unknown function
UHGV-0067322_22	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-0067322_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0067322_23	UniRef90	UniRef90_UPI001D09DA0D	ABC transporter permease	NA
UHGV-0067322_23	Structural annotation	PF16807	NA	NA
UHGV-0067322_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0067322_24	UniRef90	UniRef90_UPI001D09B824	minor capsid protein	NA
UHGV-0067322_24	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0067322_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0067322_24	Structural annotation	PF11114	NA	NA
UHGV-0067322_25	UniRef90	UniRef90_UPI001E2BB5D0	minor capsid protein	NA
UHGV-0067322_25	Structural annotation	PF20536	NA	NA
UHGV-0067322_27	PHROG	phrog_212	major head protein	head and packaging
UHGV-0067322_27	UniRef90	UniRef90_UPI00189A455D	phage capsid protein	NA
UHGV-0067322_27	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0067322_27	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0067322_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0067322_28	UniRef90	UniRef90_UPI001D0A686C	phage scaffolding protein	NA
UHGV-0067322_28	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-0067322_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0067322_28	Structural annotation	PF06810	NA	NA
UHGV-0067322_29	PHROG	phrog_3675	NA	unknown function
UHGV-0067322_29	UniRef90	UniRef90_UPI001D09CC06	YjcQ family protein	NA
UHGV-0067322_29	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0067322_29	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0067322_29	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0067322_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0067322_30	UniRef90	UniRef90_UPI001D0B3D9B	phage minor capsid protein	NA
UHGV-0067322_30	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-0067322_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0067322_30	COG	COG2369	NA	NA
UHGV-0067322_30	Structural annotation	PF06152	NA	NA
UHGV-0067322_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0067322_31	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-0067322_31	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-0067322_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0067322_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0067322_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0067322_32	UniRef90	UniRef90_UPI001D0AA0D4	terminase family protein	NA
UHGV-0067322_32	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-0067322_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0067322_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0067322_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0067322_33	PHROG	phrog_2412	NA	unknown function
UHGV-0067322_33	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-0067322_33	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0067322_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0067322_34	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0067322_34	UniRef90	UniRef90_UPI001D0A8584	DNA modification methylase	NA
UHGV-0067322_34	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-0067322_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0067322_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0067322_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0067322_34	COG	COG0863	DNA modification methylase	NA
UHGV-0067322_35	Structural annotation	TIGR01637	NA	NA
UHGV-0067322_36	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0067322_36	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0067322_36	UniRef90	UniRef90_UPI001E5F6A13	DEAD/DEAH box helicase	NA
UHGV-0067322_36	eggNOG-mapper	552396.HMPREF0863_00284	SNF2 family N-terminal domain	NA
UHGV-0067322_36	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0067322_36	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0067322_36	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0067322_36	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0067322_36	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0067322_37	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067322_37	UniRef90	UniRef90_UPI00189BA373	VRR-NUC domain-containing protein	NA
UHGV-0067322_37	eggNOG-mapper	1122146.AUHP01000010_gene1025	VRR_NUC	NA
UHGV-0067322_37	Structural annotation	PF01870, MF_00130, NF040854, COG1591	NA	NA
UHGV-0067322_39	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0067322_39	UniRef90	UniRef90_A0A413KAN3	MazG domain-containing protein	NA
UHGV-0067322_39	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0067322_40	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0067322_40	UniRef90	UniRef90_UPI001D0A1C03	virulence-associated E family protein	NA
UHGV-0067322_40	eggNOG-mapper	552396.HMPREF0863_00286	NA	NA
UHGV-0067322_40	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0067322_40	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0067322_40	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0067322_43	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0067322_43	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0067322_43	UniRef90	UniRef90_UPI001D0A031A	DNA polymerase	NA
UHGV-0067322_43	eggNOG-mapper	552396.HMPREF0863_00289	DNA polymerase	NA
UHGV-0067322_43	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0067322_43	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0067322_43	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0067322_44	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0067322_44	UniRef90	UniRef90_UPI001D0AB63B	NA	NA
UHGV-0067322_44	eggNOG-mapper	552396.HMPREF0863_00290	NA	NA
UHGV-0067322_44	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0067322_44	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0067322_45	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067322_45	UniRef90	UniRef90_UPI001D0AE809	NA	NA
UHGV-0067322_45	eggNOG-mapper	1235796.C815_00944	NA	NA
UHGV-0067322_45	Pfam	PF10926	NA	DUF2800
UHGV-0067322_45	COG	COG2887	RecB family exonuclease	NA
UHGV-0067322_45	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0067322_50	Structural annotation	PF06786	NA	NA
UHGV-0067322_51	Structural annotation	NF040990	NA	NA
UHGV-0067322_53	PHROG	phrog_585	NA	unknown function
UHGV-0067322_53	UniRef90	UniRef90_UPI0018980CB0	NA	NA
UHGV-0067322_53	Pfam	PF10711	NA	DUF2513
UHGV-0067322_57	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0067322_57	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0067322_57	UniRef90	UniRef90_UPI001D0B4888	helix-turn-helix domain-containing protein	NA
UHGV-0067322_57	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0067322_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067322_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0067322_57	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0067322_58	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0067322_58	UniRef90	UniRef90_UPI001D09EDED	helix-turn-helix domain-containing protein	NA
UHGV-0067322_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067322_58	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0067322_58	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0067322_59	KOfam	K14059	int; integrase	NA
UHGV-0067322_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0067322_59	UniRef90	UniRef90_UPI00189BAE2B	site-specific integrase	NA
UHGV-0067322_59	eggNOG-mapper	1095750.HMPREF9970_0588	Arm DNA-binding domain	NA
UHGV-0067322_59	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0067322_59	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0067322_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0067322_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0067322_59	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA