UHGV-0067518

Genome information

vOTU vOTU-011963

Genome length 34,374 bps

CDS count 48

Completeness 97.70% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067518
vOTU ID	vOTU-011963
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_86391
BioSample	SAMEA2338718
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.70% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.83
Jumbo phage	No

Genome content
Genome length	34,374 bps
GC content	39.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.98%
Average CDS length	660.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067518_1	KOfam	K14059	int; integrase	NA
UHGV-0067518_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0067518_1	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0067518_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0067518_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0067518_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0067518_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0067518_2	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0067518_2	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0067518_2	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0067518_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0067518_2	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0067518_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0067518_3	PHROG	phrog_1914	NA	unknown function
UHGV-0067518_3	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0067518_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0067518_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0067518_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0067518_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0067518_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0067518_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0067518_4	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0067518_4	eggNOG-mapper	272562.CA_C1559	sequence-specific DNA binding	NA
UHGV-0067518_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067518_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0067518_4	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0067518_5	UniRef90	UniRef90_UPI001897B0FF	helix-turn-helix transcriptional regulator	NA
UHGV-0067518_5	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0067518_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067518_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0067518_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0067518_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0067518_10	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0067518_10	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0067518_10	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0067518_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0067518_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0067518_10	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0067518_11	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0067518_11	Structural annotation	PF15597	NA	NA
UHGV-0067518_12	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-0067518_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0067518_12	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0067518_13	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0067518_14	PHROG	phrog_6058	NA	unknown function
UHGV-0067518_14	Structural annotation	NF033787	NA	NA
UHGV-0067518_15	Structural annotation	COG1862	NA	NA
UHGV-0067518_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0067518_19	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0067518_19	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0067518_19	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0067518_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0067518_19	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0067518_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0067518_19	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0067518_20	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0067518_20	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0067518_20	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0067518_20	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0067518_20	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0067518_20	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0067518_20	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0067518_20	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0067518_21	PHROG	phrog_24518	NA	unknown function
UHGV-0067518_21	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0067518_22	PHROG	phrog_824	NA	unknown function
UHGV-0067518_22	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0067518_22	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0067518_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0067518_22	Structural annotation	PF08774	NA	NA
UHGV-0067518_24	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067518_24	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0067518_24	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0067518_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0067518_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0067518_24	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0067518_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0067518_26	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0067518_26	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0067518_27	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0067518_27	Structural annotation	TIGR01636	NA	NA
UHGV-0067518_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067518_28	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0067518_28	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0067518_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0067518_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0067518_29	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0067518_29	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0067518_29	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0067518_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0067518_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0067518_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0067518_30	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0067518_30	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0067518_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0067518_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0067518_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0067518_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0067518_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0067518_31	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0067518_31	UniRef90	UniRef90_A0A374DDR5	Methyltransferase	NA
UHGV-0067518_31	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-0067518_31	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0067518_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0067518_31	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0067518_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0067518_32	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0067518_32	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0067518_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0067518_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0067518_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0067518_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0067518_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0067518_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0067518_33	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0067518_33	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-0067518_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0067518_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0067518_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0067518_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0067518_34	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0067518_34	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0067518_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0067518_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0067518_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0067518_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0067518_35	PHROG	phrog_749	NA	unknown function
UHGV-0067518_35	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0067518_35	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0067518_36	PHROG	phrog_19734	NA	unknown function
UHGV-0067518_36	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0067518_36	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0067518_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0067518_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0067518_37	eggNOG-mapper	879305.HMPREF9290_0134	NA	NA
UHGV-0067518_37	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0067518_38	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0067518_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0067518_38	Structural annotation	TIGR01725	NA	NA
UHGV-0067518_39	PHROG	phrog_88	major tail protein	tail
UHGV-0067518_39	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0067518_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0067518_39	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0067518_40	Structural annotation	PF11836	NA	NA
UHGV-0067518_41	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0067518_41	PHROG	phrog_5218	NA	unknown function
UHGV-0067518_41	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0067518_41	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0067518_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0067518_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0067518_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0067518_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0067518_42	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0067518_42	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0067518_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0067518_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0067518_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0067518_43	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0067518_43	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0067518_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0067518_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0067518_43	COG	COG1511	NA	NA
UHGV-0067518_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0067518_44	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-0067518_44	Structural annotation	PF10651, PF15432, PF08931, TIGR03711	NA	NA
UHGV-0067518_46	PHROG	phrog_1863	NA	unknown function
UHGV-0067518_46	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0067518_46	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0067518_47	PHROG	phrog_443	holin	lysis
UHGV-0067518_47	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0067518_47	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0067518_47	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0067518_47	Structural annotation	PF16945	NA	NA
UHGV-0067518_48	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0067518_48	PHROG	phrog_20388	endolysin	lysis
UHGV-0067518_48	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0067518_48	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0067518_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0067518_48	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0067518_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0067518_48	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA