UHGV-0067647

Genome information

Genome length 22,303 bps

CDS count 30

Completeness 60.31% (medium-quality)

geNomad score 0.9705

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067647
vOTU ID	vOTU-024419
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_70579
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9705
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.91
Jumbo phage	No

Genome content
Genome length	22,303 bps
GC content	49.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.85%
Average CDS length	693.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067647_1	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067647_1	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0067647_1	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0067647_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0067647_2	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0067647_2	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0067647_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0067647_2	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0067647_3	PHROG	phrog_104	portal protein	head and packaging
UHGV-0067647_3	UniRef90	UniRef90_A0A316PMS0	Phage portal protein	NA
UHGV-0067647_3	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0067647_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0067647_4	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0067647_4	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0067647_4	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0067647_4	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0067647_5	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0067647_5	UniRef90	UniRef90_UPI00195B7610	phage scaffolding protein	NA
UHGV-0067647_5	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0067647_5	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0067647_5	Structural annotation	PF06810	NA	NA
UHGV-0067647_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0067647_6	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0067647_6	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0067647_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0067647_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0067647_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0067647_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0067647_7	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0067647_7	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0067647_7	Structural annotation	PF09355	NA	NA
UHGV-0067647_8	PHROG	phrog_501	head closure Hc1	connector
UHGV-0067647_8	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0067647_8	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0067647_9	PHROG	phrog_387	neck protein	connector
UHGV-0067647_9	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-0067647_9	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0067647_10	PHROG	phrog_123	tail terminator	connector
UHGV-0067647_10	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-0067647_10	eggNOG-mapper	157924.Q7Y4H9_9CAUD	NA	NA
UHGV-0067647_10	Structural annotation	PF06141	NA	NA
UHGV-0067647_11	PHROG	phrog_117	major tail protein	tail
UHGV-0067647_11	UniRef90	UniRef90_A0A316PMT1	Phage tail protein	NA
UHGV-0067647_11	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0067647_11	COG	COG5492	NA	NA
UHGV-0067647_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0067647_12	PHROG	phrog_1526	NA	unknown function
UHGV-0067647_12	UniRef90	UniRef90_G2SN49	NA	NA
UHGV-0067647_12	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0067647_13	PHROG	phrog_1633	NA	unknown function
UHGV-0067647_13	UniRef90	UniRef90_UPI001939D555	NA	NA
UHGV-0067647_13	eggNOG-mapper	768726.HMPREF9178_1055	NA	NA
UHGV-0067647_13	Pfam	PF17318	NA	DUF5361
UHGV-0067647_13	Structural annotation	PF17318	NA	NA
UHGV-0067647_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0067647_14	UniRef90	UniRef90_A0A0R1K502	Phage tape measure protein	NA
UHGV-0067647_14	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0067647_14	COG	COG1511	NA	NA
UHGV-0067647_14	Structural annotation	PF20155	NA	NA
UHGV-0067647_15	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067647_15	UniRef90	UniRef90_A0A0R1K4I1	HNHc domain-containing protein	NA
UHGV-0067647_15	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-0067647_15	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0067647_15	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0067647_15	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0067647_16	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0067647_16	UniRef90	UniRef90_A0A316Q0J4	PblA	NA
UHGV-0067647_16	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0067647_16	COG	COG1511	NA	NA
UHGV-0067647_16	Structural annotation	NF003615, COG3006	NA	NA
UHGV-0067647_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0067647_17	UniRef90	UniRef90_A0A3A6ECR2	Phage tail family protein	NA
UHGV-0067647_17	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0067647_17	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0067647_18	PHROG	phrog_538	minor tail protein	tail
UHGV-0067647_18	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0067647_18	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0067647_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0067647_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0067647_19	PHROG	phrog_9534	head protein	head and packaging
UHGV-0067647_19	UniRef90	UniRef90_A0A1Y4GY33	Collar domain-containing protein	NA
UHGV-0067647_19	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0067647_19	Structural annotation	PF21567	NA	NA
UHGV-0067647_20	Structural annotation	PF21253, NF038128	NA	NA
UHGV-0067647_21	eggNOG-mapper	665956.HMPREF1032_03264	NA	NA
UHGV-0067647_21	Structural annotation	PF02010, MF_04116, NF032891, COG3401	NA	NA
UHGV-0067647_22	PHROG	phrog_27355	NA	unknown function
UHGV-0067647_22	UniRef90	UniRef90_A0A6F9XJJ8	Peptidylprolyl isomerase	NA
UHGV-0067647_22	eggNOG-mapper	665956.HMPREF1032_03265	NA	NA
UHGV-0067647_22	Structural annotation	PF06199, TIGR01633, COG3499	NA	NA
UHGV-0067647_23	PHROG	phrog_1887	tail protein	tail
UHGV-0067647_23	UniRef90	UniRef90_G9RS94	NA	NA
UHGV-0067647_23	eggNOG-mapper	665956.HMPREF1032_03266	NA	NA
UHGV-0067647_23	Pfam	PF16467	NA	DUF5048
UHGV-0067647_23	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0067647_24	eggNOG-mapper	742733.HMPREF9469_00966	NA	NA
UHGV-0067647_25	eggNOG-mapper	665956.HMPREF1032_03268	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0067647_26	Structural annotation	PF21253, NF038128	NA	NA
UHGV-0067647_27	Structural annotation	PF11514	NA	NA
UHGV-0067647_28	PHROG	phrog_11037	NA	unknown function
UHGV-0067647_28	UniRef90	UniRef90_A0A372V7Z4	Peptidase_M23 domain-containing protein	NA
UHGV-0067647_28	eggNOG-mapper	665956.HMPREF1032_03271	NA	NA
UHGV-0067647_28	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0067647_29	PHROG	phrog_1129	holin	lysis
UHGV-0067647_29	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-0067647_29	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0067647_29	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0067647_29	Structural annotation	PF06946	NA	NA
UHGV-0067647_30	eggNOG-mapper	665956.HMPREF1032_03776	Cell envelope-like function transcriptional attenuator common domain protein	NA
UHGV-0067647_30	COG	COG1316	Anionic cell wall polymer biosynthesis enzyme TagV/TagU, LytR-Cps2A-Psr (LCP) family (peptidoglycan teichoic acid transferase)	NA