UHGV-0067681

Genome information

Genome length 39,099 bps

CDS count 61

Completeness 89.08% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067681
vOTU ID	vOTU-034316
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_94338
BioSample	SAMEA2466997
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.74
Jumbo phage	No

Genome content
Genome length	39,099 bps
GC content	54.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.75%
Average CDS length	593.51 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067681_1	PHROG	phrog_6616	tail protein	tail
UHGV-0067681_1	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0067681_2	PHROG	phrog_1194	NA	unknown function
UHGV-0067681_2	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-0067681_2	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0067681_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0067681_3	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-0067681_3	COG	COG1511	NA	NA
UHGV-0067681_4	PHROG	phrog_706	NA	unknown function
UHGV-0067681_4	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-0067681_4	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-0067681_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0067681_4	Structural annotation	PF06854	NA	NA
UHGV-0067681_5	PHROG	phrog_11299	NA	unknown function
UHGV-0067681_5	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-0067681_5	Structural annotation	PF10666	NA	NA
UHGV-0067681_6	PHROG	phrog_3099	NA	unknown function
UHGV-0067681_6	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-0067681_6	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0067681_7	PHROG	phrog_3266	tail completion	connector
UHGV-0067681_7	eggNOG-mapper	663278.Ethha_0492	NA	NA
UHGV-0067681_7	Structural annotation	PF12691	NA	NA
UHGV-0067681_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0067681_8	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-0067681_8	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0067681_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0067681_8	Structural annotation	PF11114	NA	NA
UHGV-0067681_9	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-0067681_9	Pfam	PF20536	NA	DUF6751
UHGV-0067681_9	Structural annotation	PF20536	NA	NA
UHGV-0067681_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0067681_10	eggNOG-mapper	663278.Ethha_0495	NA	NA
UHGV-0067681_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0067681_11	UniRef90	UniRef90_A0A367GHJ2	Phage major capsid protein	NA
UHGV-0067681_11	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0067681_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0067681_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0067681_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0067681_11	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0067681_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0067681_12	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-0067681_12	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0067681_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0067681_12	Structural annotation	PF06810	NA	NA
UHGV-0067681_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0067681_15	UniRef90	UniRef90_A0A1C5NZK4	Phage minor capsid protein 2	NA
UHGV-0067681_15	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0067681_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0067681_15	COG	COG2369	NA	NA
UHGV-0067681_15	Structural annotation	PF06152	NA	NA
UHGV-0067681_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0067681_16	UniRef90	UniRef90_A0A367GFE3	Capsid protein	NA
UHGV-0067681_16	eggNOG-mapper	663278.Ethha_0090	NA	NA
UHGV-0067681_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0067681_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0067681_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0067681_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0067681_17	UniRef90	UniRef90_A0A367GH60	PBSX family phage terminase large subunit	NA
UHGV-0067681_17	eggNOG-mapper	1120746.CCNL01000014_gene2093	DNA packaging	NA
UHGV-0067681_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0067681_17	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0067681_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0067681_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0067681_17	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0067681_20	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0067681_20	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0067681_21	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0067681_21	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0067681_21	UniRef90	UniRef90_UPI001E2E3568	ParB N-terminal domain-containing protein	NA
UHGV-0067681_21	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-0067681_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0067681_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0067681_21	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0067681_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0067681_22	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0067681_22	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0067681_26	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0067681_28	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0067681_28	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0067681_28	UniRef90	UniRef90_A0A3A6E967	Methyltransferase	NA
UHGV-0067681_28	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0067681_28	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0067681_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0067681_28	COG	COG0863	DNA modification methylase	NA
UHGV-0067681_28	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0067681_31	PHROG	phrog_824	NA	unknown function
UHGV-0067681_31	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0067681_31	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0067681_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0067681_33	PHROG	phrog_16304	NA	unknown function
UHGV-0067681_33	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-0067681_33	Pfam	PF19808	NA	DUF6291
UHGV-0067681_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0067681_33	Structural annotation	PF19808	NA	NA
UHGV-0067681_34	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0067681_34	UniRef90	UniRef90_A0A329URB3	Lactamase_B domain-containing protein	NA
UHGV-0067681_34	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0067681_34	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0067681_34	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0067681_34	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0067681_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0067681_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0067681_35	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-0067681_35	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0067681_35	Pfam	PF03837	RecT family	RecT
UHGV-0067681_35	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0067681_35	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0067681_35	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0067681_36	PHROG	phrog_674	NA	unknown function
UHGV-0067681_36	UniRef90	UniRef90_UPI0012DE873F	NA	NA
UHGV-0067681_36	eggNOG-mapper	1227266.HMPREF1551_00563	NA	NA
UHGV-0067681_36	Pfam	PF07083	NA	DUF1351
UHGV-0067681_36	Structural annotation	PF07083	NA	NA
UHGV-0067681_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0067681_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0067681_42	UniRef90	UniRef90_UPI00195ED9E7	helix-turn-helix domain-containing protein	NA
UHGV-0067681_42	eggNOG-mapper	1410630.JNKP01000005_gene854	Helix-turn-helix XRE-family like proteins	NA
UHGV-0067681_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067681_42	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0067681_42	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0067681_43	PHROG	phrog_1221	NA	unknown function
UHGV-0067681_43	UniRef90	UniRef90_E2ZNU3	Phage/plasmid-related protein TIGR03299	NA
UHGV-0067681_43	eggNOG-mapper	748224.HMPREF9436_03374	NA	NA
UHGV-0067681_43	Pfam	PF06067	NA	DUF932
UHGV-0067681_43	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-0067681_43	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-0067681_45	Structural annotation	PF06531	NA	NA
UHGV-0067681_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0067681_48	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0067681_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0067681_48	Structural annotation	PF01381, PF08667, NF041951, COG1396	NA	NA
UHGV-0067681_50	KOfam	K14059	int; integrase	NA
UHGV-0067681_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0067681_50	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0067681_50	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0067681_50	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0067681_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0067681_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0067681_50	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0067681_51	PHROG	phrog_1129	holin	lysis
UHGV-0067681_51	UniRef90	UniRef90_A0A367FT42	Enolase	NA
UHGV-0067681_51	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0067681_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0067681_51	Structural annotation	PF06946	NA	NA
UHGV-0067681_52	PHROG	phrog_4105	NA	unknown function
UHGV-0067681_52	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0067681_53	KOfam	K07273	acm; lysozyme	NA
UHGV-0067681_53	PHROG	phrog_291	endolysin	lysis
UHGV-0067681_53	UniRef90	UniRef90_UPI00195E5E78	glycoside hydrolase family 25 protein	NA
UHGV-0067681_53	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0067681_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0067681_53	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0067681_53	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0067681_55	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0067681_55	UniRef90	UniRef90_UPI0019223612	phage tail assembly chaperone	NA
UHGV-0067681_55	eggNOG-mapper	561229.Dd1591_4028	Phage tail assembly chaperone protein	NA
UHGV-0067681_55	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0067681_55	Structural annotation	PF16778	NA	NA
UHGV-0067681_56	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0067681_56	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0067681_56	UniRef90	UniRef90_UPI0012B5656A	RNA-directed DNA polymerase	NA
UHGV-0067681_56	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0067681_56	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0067681_56	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0067681_56	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0067681_56	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0067681_57	PHROG	phrog_5302	tail protein	tail
UHGV-0067681_57	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-0067681_57	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0067681_59	PHROG	phrog_18444	NA	unknown function
UHGV-0067681_59	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0067681_59	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0067681_60	PHROG	phrog_18190	NA	unknown function
UHGV-0067681_60	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0067681_60	Structural annotation	PF14594, PF16351, PF04620, NF033848, COG4379	NA	NA
UHGV-0067681_61	eggNOG-mapper	411471.SUBVAR_06933	NA	NA