UHGV-0067698

Genome information

Genome length 40,501 bps

CDS count 53

Completeness 85.89% (medium-quality)

geNomad score 0.9708

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067698
vOTU ID	vOTU-032472
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_97499
BioSample	SAMEA2466907
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9708
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.32
Jumbo phage	No

Genome content
Genome length	40,501 bps
GC content	38.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.42%
Average CDS length	693.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067698_1	PHROG	phrog_5147	NA	unknown function
UHGV-0067698_1	eggNOG-mapper	399741.Spro_3872	NA	NA
UHGV-0067698_5	PHROG	phrog_4171	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0067698_5	eggNOG-mapper	940282.CADQ01000022_gene2093	NA	NA
UHGV-0067698_6	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067698_6	UniRef90	UniRef90_N9CNA7	YqaJ domain-containing protein	NA
UHGV-0067698_6	eggNOG-mapper	202956.BBNL01000011_gene2401	YqaJ-like viral recombinase domain	NA
UHGV-0067698_6	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0067698_6	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0067698_6	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0067698_8	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0067698_8	Pfam	PF10097	NA	DUF2335
UHGV-0067698_10	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0067698_10	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0067698_10	UniRef90	UniRef90_A0A350CT17	Helix-turn-helix transcriptional regulator	NA
UHGV-0067698_10	eggNOG-mapper	762966.HMPREF9439_01014	Peptidase S24-like	NA
UHGV-0067698_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067698_10	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0067698_10	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0067698_10	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0067698_11	PHROG	phrog_8008	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0067698_11	UniRef90	UniRef90_UPI001CC6D725	helix-turn-helix domain-containing protein	NA
UHGV-0067698_11	eggNOG-mapper	1266925.JHVX01000006_gene2048	NA	NA
UHGV-0067698_12	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0067698_12	Structural annotation	PF05584, MF_01177, NF040939, COG5529	NA	NA
UHGV-0067698_13	Structural annotation	PF11417	NA	NA
UHGV-0067698_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0067698_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0067698_14	UniRef90	UniRef90_UPI001C62C367	replicative DNA helicase	NA
UHGV-0067698_14	eggNOG-mapper	762983.HMPREF9444_01711	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0067698_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0067698_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0067698_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0067698_14	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0067698_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0067698_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0067698_15	UniRef90	UniRef90_UPI001C62ED2C	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0067698_15	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0067698_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0067698_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0067698_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0067698_16	Structural annotation	PF06530	NA	NA
UHGV-0067698_19	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0067698_19	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0067698_19	UniRef90	UniRef90_UPI001C637DA1	dCTP deaminase	NA
UHGV-0067698_19	eggNOG-mapper	309799.DICTH_1754	dUTP biosynthetic process	NA
UHGV-0067698_19	Pfam	PF00692	dUTPase	dUTPase
UHGV-0067698_19	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0067698_19	COG	COG0717	dCTP deaminase	NA
UHGV-0067698_21	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0067698_21	eggNOG-mapper	1197719.A464_2022	NA	NA
UHGV-0067698_21	Structural annotation	PF12728, TIGR01764, COG4220	NA	NA
UHGV-0067698_22	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0067698_22	UniRef90	UniRef90_R5EZB5	Phage holin lambda family protein	NA
UHGV-0067698_22	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0067698_22	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0067698_23	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0067698_23	PHROG	phrog_7	endolysin	lysis
UHGV-0067698_23	UniRef90	UniRef90_R5EL25	Lysozyme	NA
UHGV-0067698_23	eggNOG-mapper	1094551.MEC_01314	Phage lysozyme	NA
UHGV-0067698_23	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0067698_23	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0067698_23	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0067698_26	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0067698_26	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0067698_26	UniRef90	UniRef90_A0A662Z7S0	Phage terminase, large subunit GpA	NA
UHGV-0067698_26	eggNOG-mapper	742823.HMPREF9465_00226	terminase GpA	NA
UHGV-0067698_26	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0067698_26	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0067698_26	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0067698_26	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0067698_26	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0067698_27	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0067698_27	UniRef90	UniRef90_UPI000467F499	NA	NA
UHGV-0067698_27	eggNOG-mapper	742823.HMPREF9465_00224	NA	NA
UHGV-0067698_27	Pfam	PF19645	NA	DUF6148
UHGV-0067698_27	Structural annotation	PF19645	NA	NA
UHGV-0067698_28	PHROG	phrog_21	portal protein	head and packaging
UHGV-0067698_28	UniRef90	UniRef90_A0A662Z5X1	Phage portal protein, lambda family	NA
UHGV-0067698_28	eggNOG-mapper	742823.HMPREF9465_00223	Phage portal protein, lambda family	NA
UHGV-0067698_28	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0067698_28	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0067698_28	COG	COG5511	Phage capsid protein	NA
UHGV-0067698_28	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0067698_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0067698_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0067698_29	UniRef90	UniRef90_A0A662Z8E6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0067698_29	eggNOG-mapper	1476902.A0A067ZG37_9CAUD	Clp protease	NA
UHGV-0067698_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0067698_29	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0067698_30	PHROG	phrog_49	head decoration	head and packaging
UHGV-0067698_30	UniRef90	UniRef90_A0A662Z5W5	Bacteriophage lambda head decoration protein D	NA
UHGV-0067698_30	eggNOG-mapper	1460634.JCM19037_4597	Bacteriophage lambda head decoration protein D	NA
UHGV-0067698_30	Structural annotation	PF02924, COG5471	NA	NA
UHGV-0067698_31	PHROG	phrog_29	major head protein	head and packaging
UHGV-0067698_31	UniRef90	UniRef90_A0A662Z810	Phage major capsid protein E	NA
UHGV-0067698_31	eggNOG-mapper	742823.HMPREF9465_00220	Phage major capsid protein E	NA
UHGV-0067698_31	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0067698_31	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0067698_33	PHROG	phrog_2551	minor tail protein	tail
UHGV-0067698_33	UniRef90	UniRef90_A0A0U9HJK6	ATP-binding sugar transporter	NA
UHGV-0067698_33	eggNOG-mapper	1235793.C809_02665	ATP-binding sugar transporter from pro-phage	NA
UHGV-0067698_33	Structural annotation	PF13856	NA	NA
UHGV-0067698_34	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0067698_34	UniRef90	UniRef90_A0A662Z9Q3	Prophage minor tail protein Z (GPZ)	NA
UHGV-0067698_34	eggNOG-mapper	268407.PWYN_00070	Prophage minor tail protein Z (GPZ)	NA
UHGV-0067698_34	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0067698_34	Structural annotation	PF06763	NA	NA
UHGV-0067698_35	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0067698_35	eggNOG-mapper	742823.HMPREF9465_00216	NA	NA
UHGV-0067698_35	Structural annotation	PF06141	NA	NA
UHGV-0067698_37	KOfam	K06907	NA	NA
UHGV-0067698_37	PHROG	phrog_23	tail sheath	tail
UHGV-0067698_37	UniRef90	UniRef90_A0A3B9Q8J5	Phage tail protein	NA
UHGV-0067698_37	eggNOG-mapper	742823.HMPREF9465_00214	tail sheath protein	NA
UHGV-0067698_37	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0067698_37	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0067698_38	KOfam	K06908	NA	NA
UHGV-0067698_38	PHROG	phrog_55	head closure	connector
UHGV-0067698_38	UniRef90	UniRef90_D5EFA5	Major tail tube protein	NA
UHGV-0067698_38	eggNOG-mapper	572547.Amico_1113	Phage tail tube protein FII	NA
UHGV-0067698_38	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0067698_38	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0067698_38	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0067698_39	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0067698_39	UniRef90	UniRef90_UPI00097D2230	phage tail assembly protein	NA
UHGV-0067698_39	eggNOG-mapper	742823.HMPREF9465_00212	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0067698_39	Structural annotation	PF10109	NA	NA
UHGV-0067698_40	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0067698_40	UniRef90	UniRef90_A0A1M7YBQ5	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0067698_40	eggNOG-mapper	742823.HMPREF9465_00211	Phage-related minor tail protein	NA
UHGV-0067698_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0067698_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0067698_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0067698_41	PHROG	phrog_46	tail protein	tail
UHGV-0067698_41	UniRef90	UniRef90_A0A662Z5W0	P2-like prophage tail protein X	NA
UHGV-0067698_41	eggNOG-mapper	198467.NP92_02880	Tail protein	NA
UHGV-0067698_41	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0067698_41	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0067698_41	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0067698_42	KOfam	K06905	NA	NA
UHGV-0067698_42	PHROG	phrog_52	tail protein	tail
UHGV-0067698_42	UniRef90	UniRef90_A0A2X0V8M0	Phage protein D	NA
UHGV-0067698_42	eggNOG-mapper	742823.HMPREF9465_00209	Late control D family protein	NA
UHGV-0067698_42	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0067698_42	COG	COG3500	NA	NA
UHGV-0067698_42	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0067698_43	PHROG	phrog_9992	baseplate assembly protein	tail
UHGV-0067698_43	UniRef90	UniRef90_A0A2X0V6P6	Phage P2 baseplate assembly protein gpV	NA
UHGV-0067698_43	eggNOG-mapper	742823.HMPREF9465_00208	Baseplate assembly protein	NA
UHGV-0067698_43	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0067698_43	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0067698_43	Structural annotation	PF04717, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0067698_44	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0067698_44	UniRef90	UniRef90_A0A662ZF42	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion	NA
UHGV-0067698_44	eggNOG-mapper	927704.SELR_16680	PAAR repeat-containing protein	NA
UHGV-0067698_44	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0067698_44	Pfam	PF19940	NA	DUF6402
UHGV-0067698_44	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0067698_44	Structural annotation	PF19940, PF05488, NF033420, COG4104	NA	NA
UHGV-0067698_46	PHROG	phrog_585	NA	unknown function
UHGV-0067698_46	UniRef90	UniRef90_UPI0013F606B1	NA	NA
UHGV-0067698_46	Pfam	PF10711	NA	DUF2513
UHGV-0067698_46	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0067698_47	eggNOG-mapper	563192.HMPREF0179_01583	PFAM Baseplate	NA
UHGV-0067698_47	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0067698_48	PHROG	phrog_48	tail protein	tail
UHGV-0067698_48	UniRef90	UniRef90_A0A662Z5U2	Phage tail protein, P2 protein I family	NA
UHGV-0067698_48	eggNOG-mapper	742823.HMPREF9465_00204	Tail protein I	NA
UHGV-0067698_48	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0067698_48	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0067698_48	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0067698_48	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0067698_49	PHROG	phrog_15547	NA	unknown function
UHGV-0067698_49	UniRef90	UniRef90_UPI000B797337	phage tail protein	NA
UHGV-0067698_49	eggNOG-mapper	1197719.A464_2002	tail collar domain protein	NA
UHGV-0067698_49	COG	COG4675	Phage tail collar domain	NA
UHGV-0067698_51	UniRef90	UniRef90_A0A2X0WRH0	Anaerobic ribonucleoside triphosphate reductase	NA
UHGV-0067698_51	eggNOG-mapper	1410676.JNKL01000005_gene333	CTP reductase activity	NA
UHGV-0067698_51	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0067698_51	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0067698_52	PHROG	phrog_2284	NA	unknown function
UHGV-0067698_52	UniRef90	UniRef90_UPI001C63A5C6	NA	NA
UHGV-0067698_52	eggNOG-mapper	156889.Mmc1_3319	NA	NA
UHGV-0067698_52	Pfam	PF15956	NA	DUF4760
UHGV-0067698_52	Structural annotation	PF15956	NA	NA
UHGV-0067698_53	KOfam	K14059	int; integrase	NA
UHGV-0067698_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0067698_53	UniRef90	UniRef90_A0A662Z8H7	Integrase	NA
UHGV-0067698_53	eggNOG-mapper	1265503.KB905160_gene2391	Arm DNA-binding domain	NA
UHGV-0067698_53	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0067698_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0067698_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0067698_53	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA