UHGV-0067793

Genome information

Genome length 37,956 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067793
vOTU ID	vOTU-073283
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_77573
BioSample	SAMEA2338768
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.27
Jumbo phage	No

Genome content
Genome length	37,956 bps
GC content	27.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.84%
Average CDS length	558.14 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067793_1	PHROG	phrog_1281	NA	unknown function
UHGV-0067793_1	UniRef90	UniRef90_R5N7Q9	NA	NA
UHGV-0067793_1	eggNOG-mapper	875454.BAEW01000002_gene485	NA	NA
UHGV-0067793_1	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0067793_1	COG	COG3600	NA	NA
UHGV-0067793_1	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0067793_3	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0067793_3	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0067793_3	UniRef90	UniRef90_UPI000A593315	M23 family metallopeptidase	NA
UHGV-0067793_3	eggNOG-mapper	285535.JOEY01000005_gene7939	Peptidase family M23	NA
UHGV-0067793_3	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0067793_3	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0067793_3	Structural annotation	PF01551, PF08239, NF040883, COG0739, COG4991	NA	NA
UHGV-0067793_4	PHROG	phrog_199	holin	lysis
UHGV-0067793_4	UniRef90	UniRef90_A0A843HL15	Phage holin family protein	NA
UHGV-0067793_4	eggNOG-mapper	877414.ATWA01000062_gene1614	Bacteriophage holin family	NA
UHGV-0067793_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0067793_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0067793_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0067793_5	PHROG	phrog_24267	NA	unknown function
UHGV-0067793_5	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0067793_5	eggNOG-mapper	764299.STRIC_1424	tail collar domain protein	NA
UHGV-0067793_5	COG	COG4675	Phage tail collar domain	NA
UHGV-0067793_5	Structural annotation	COG4675	NA	NA
UHGV-0067793_6	eggNOG-mapper	742742.HMPREF9452_01288	NA	NA
UHGV-0067793_8	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0067793_9	PHROG	phrog_24267	NA	unknown function
UHGV-0067793_9	UniRef90	UniRef90_A0A0K9NII1	Putative prophage LambdaSa04, minor structural protein	NA
UHGV-0067793_9	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0067793_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0067793_12	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0067793_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0067793_13	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0067793_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0067793_13	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0067793_14	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0067793_14	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0067793_15	PHROG	phrog_10934	NA	unknown function
UHGV-0067793_15	eggNOG-mapper	883114.HMPREF9709_01227	NA	NA
UHGV-0067793_16	PHROG	phrog_706	NA	unknown function
UHGV-0067793_16	UniRef90	UniRef90_UPI00058BE151	bacteriophage Gp15 family protein	NA
UHGV-0067793_16	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0067793_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0067793_16	Structural annotation	PF06854	NA	NA
UHGV-0067793_17	PHROG	phrog_4450	NA	unknown function
UHGV-0067793_17	UniRef90	UniRef90_UPI0018AB083C	AP endonuclease	NA
UHGV-0067793_17	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0067793_17	Pfam	PF20378	NA	DUF6673
UHGV-0067793_17	Structural annotation	PF20378	NA	NA
UHGV-0067793_18	PHROG	phrog_3099	NA	unknown function
UHGV-0067793_18	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-0067793_18	Structural annotation	PF13715, PF08813, TIGR02126, TIGR04134, COG5437	NA	NA
UHGV-0067793_19	PHROG	phrog_3266	tail completion	connector
UHGV-0067793_19	UniRef90	UniRef90_UPI0011DD0321	chloramphenicol resistance protein	NA
UHGV-0067793_19	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-0067793_19	Structural annotation	PF12691	NA	NA
UHGV-0067793_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0067793_20	UniRef90	UniRef90_A0A1C6GMA0	Minor capsid protein	NA
UHGV-0067793_20	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0067793_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0067793_20	Structural annotation	PF11114	NA	NA
UHGV-0067793_21	PHROG	phrog_3366	NA	unknown function
UHGV-0067793_21	Pfam	PF20536	NA	DUF6751
UHGV-0067793_21	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0067793_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0067793_23	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0067793_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0067793_24	UniRef90	UniRef90_A0A843GYP6	Phage major capsid protein	NA
UHGV-0067793_24	eggNOG-mapper	1235792.C808_05368	Phage capsid family	NA
UHGV-0067793_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0067793_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0067793_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0067793_24	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0067793_25	Structural annotation	PF06810	NA	NA
UHGV-0067793_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0067793_27	UniRef90	UniRef90_K1TV07	Phage minor capsid protein 2 (Fragment)	NA
UHGV-0067793_27	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0067793_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0067793_27	COG	COG2369	NA	NA
UHGV-0067793_27	Structural annotation	PF06152	NA	NA
UHGV-0067793_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0067793_29	UniRef90	UniRef90_UPI00067F2A1B	phage portal protein	NA
UHGV-0067793_29	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0067793_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0067793_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0067793_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0067793_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0067793_30	UniRef90	UniRef90_A0A0X8VAD6	Terminase-like family protein	NA
UHGV-0067793_30	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0067793_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0067793_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0067793_30	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0067793_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0067793_34	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0067793_36	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0067793_37	PHROG	phrog_31900	NA	unknown function
UHGV-0067793_43	eggNOG-mapper	1232453.BAIF02000066_gene2288	NA	NA
UHGV-0067793_43	Pfam	PF00569	Zinc finger, ZZ type	ZZ
UHGV-0067793_45	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0067793_45	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0067793_45	UniRef90	UniRef90_R7FBH8	Helicase C-terminal domain-containing protein	NA
UHGV-0067793_45	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-0067793_45	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0067793_45	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0067793_45	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0067793_45	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0067793_45	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0067793_46	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0067793_46	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0067793_46	Structural annotation	PF03838, MF_01490, NF040854, COG1591	NA	NA
UHGV-0067793_49	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0067793_49	UniRef90	UniRef90_UPI0006936C9D	NA	NA
UHGV-0067793_49	eggNOG-mapper	903814.ELI_3221	NA	NA
UHGV-0067793_49	Pfam	PF06048	NA	DUF927
UHGV-0067793_49	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0067793_49	COG	COG5519	NA	NA
UHGV-0067793_49	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0067793_50	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0067793_50	PHROG	phrog_11992	NA	unknown function
UHGV-0067793_50	UniRef90	UniRef90_R7F6U7	DNA primase (Bacterial type)	NA
UHGV-0067793_50	eggNOG-mapper	180332.JTGN01000007_gene3543	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0067793_50	PADLOC	drt-cluster192	DRT	DRT
UHGV-0067793_50	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0067793_50	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0067793_50	Structural annotation	PF01807	NA	NA
UHGV-0067793_51	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067793_51	UniRef90	UniRef90_A0A4P6YX48	HNH endonuclease	NA
UHGV-0067793_51	eggNOG-mapper	945021.TEH_18310	NUMOD4 motif	NA
UHGV-0067793_51	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0067793_51	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0067793_51	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0067793_51	Structural annotation	PF07463	NA	NA
UHGV-0067793_52	PHROG	phrog_18107	NA	unknown function
UHGV-0067793_52	UniRef90	UniRef90_R7F806	PF05037 family protein	NA
UHGV-0067793_52	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0067793_52	Pfam	PF05037	NA	DUF669
UHGV-0067793_52	Structural annotation	PF05037	NA	NA
UHGV-0067793_53	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0067793_53	UniRef90	UniRef90_A0A0M2NNJ8	NA	NA
UHGV-0067793_53	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0067793_53	Pfam	PF13479	AAA domain	AAA_24
UHGV-0067793_53	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0067793_55	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0067793_55	UniRef90	UniRef90_UPI001ADD97E1	siphovirus Gp157 family protein	NA
UHGV-0067793_55	eggNOG-mapper	397290.C810_05162	Siphovirus Gp157	NA
UHGV-0067793_55	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0067793_55	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0067793_58	UniRef90	UniRef90_R7F8M8	LysM domain-containing protein	NA
UHGV-0067793_58	eggNOG-mapper	720554.Clocl_1747	Lysin motif	NA
UHGV-0067793_58	Pfam	PF01476	LysM domain	LysM
UHGV-0067793_58	COG	COG1388	LysM repeat	NA
UHGV-0067793_58	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0067793_59	PHROG	phrog_6058	NA	unknown function
UHGV-0067793_59	UniRef90	UniRef90_A0A7X9GS36	Helix-turn-helix domain-containing protein	NA
UHGV-0067793_59	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-0067793_59	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0067793_60	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067793_60	UniRef90	UniRef90_UPI001959A293	HNH endonuclease	NA
UHGV-0067793_60	eggNOG-mapper	1283338.Q4Z9A7_BPTWO	sequence-specific DNA binding transcription factor activity	NA
UHGV-0067793_60	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0067793_60	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0067793_61	UniRef90	UniRef90_A0A3D1PJT4	HTH cro/C1-type domain-containing protein	NA
UHGV-0067793_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067793_61	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0067793_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0067793_62	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0067793_62	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0067793_62	UniRef90	UniRef90_R6H5R4	LexA repressor	NA
UHGV-0067793_62	eggNOG-mapper	394503.Ccel_3317	Peptidase S24-like	NA
UHGV-0067793_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067793_62	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0067793_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0067793_62	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF010465, COG1974, COG1476	NA	NA
UHGV-0067793_63	KOfam	K14059	int; integrase	NA
UHGV-0067793_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0067793_63	UniRef90	UniRef90_A0A1Q6L7V2	Tyr recombinase domain-containing protein	NA
UHGV-0067793_63	eggNOG-mapper	1462527.CCDM010000010_gene473	Phage integrase family	NA
UHGV-0067793_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0067793_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0067793_63	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0067793_64	PHROG	phrog_27309	S-adenosylmethionine decarboxylase	other
UHGV-0067793_64	UniRef90	UniRef90_A0A349E169	Spermidine synthase	NA
UHGV-0067793_64	eggNOG-mapper	620914.JH621255_gene601	S-adenosylmethionine decarboxylase	NA
UHGV-0067793_64	Pfam	PF02675	S-adenosylmethionine decarboxylase	AdoMet_dc
UHGV-0067793_64	COG	COG1586	S-adenosylmethionine decarboxylase	NA
UHGV-0067793_64	Structural annotation	PF02675, MF_00464, TIGR03330, COG1586	NA	NA