UHGV-0067873

Genome information

Genome length 39,766 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067873
vOTU ID	vOTU-055175
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_80222
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.33
Jumbo phage	No

Genome content
Genome length	39,766 bps
GC content	46.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	87.15%
Average CDS length	611.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067873_1	PHROG	phrog_1419	tail protein	tail
UHGV-0067873_1	eggNOG-mapper	742733.HMPREF9469_01805	NA	NA
UHGV-0067873_1	Structural annotation	PF13619	NA	NA
UHGV-0067873_3	PHROG	phrog_18190	NA	unknown function
UHGV-0067873_3	UniRef90	UniRef90_G5HGN8	Peptidase S74 domain-containing protein	NA
UHGV-0067873_3	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0067873_3	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0067873_4	PHROG	phrog_1194	NA	unknown function
UHGV-0067873_4	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0067873_4	Pfam	PF20458	NA	DUF6711
UHGV-0067873_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0067873_5	PHROG	phrog_2546	NA	unknown function
UHGV-0067873_5	UniRef90	UniRef90_UPI000D64EFE0	zinc ribbon domain-containing protein	NA
UHGV-0067873_5	eggNOG-mapper	742733.HMPREF9469_01813	PFAM Mo-dependent nitrogenase	NA
UHGV-0067873_5	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0067873_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0067873_6	UniRef90	UniRef90_A0A174GX48	Phage-like protein	NA
UHGV-0067873_6	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0067873_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0067873_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0067873_7	PHROG	phrog_2066	NA	unknown function
UHGV-0067873_7	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0067873_8	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0067873_8	UniRef90	UniRef90_UPI0008324CF8	NA	NA
UHGV-0067873_8	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0067873_8	Pfam	PF19591	NA	DUF6096
UHGV-0067873_8	Structural annotation	PF19591	NA	NA
UHGV-0067873_9	PHROG	phrog_158	major tail protein	tail
UHGV-0067873_9	UniRef90	UniRef90_A0A395YJ71	Phage tail protein	NA
UHGV-0067873_9	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0067873_9	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0067873_9	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0067873_10	PHROG	phrog_78	tail terminator	connector
UHGV-0067873_10	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0067873_10	Structural annotation	PF05657	NA	NA
UHGV-0067873_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0067873_11	UniRef90	UniRef90_G5FH80	HK97 gp10 family phage protein	NA
UHGV-0067873_11	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0067873_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0067873_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0067873_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0067873_12	PHROG	phrog_2168	NA	unknown function
UHGV-0067873_12	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0067873_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0067873_13	UniRef90	UniRef90_UPI0006DCAE5D	phage head-tail connector protein	NA
UHGV-0067873_13	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0067873_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0067873_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0067873_14	PHROG	phrog_2724	NA	unknown function
UHGV-0067873_14	UniRef90	UniRef90_G5FH82	Rho_N domain-containing protein	NA
UHGV-0067873_14	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0067873_14	Structural annotation	PF07498	NA	NA
UHGV-0067873_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0067873_15	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0067873_15	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0067873_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0067873_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0067873_16	UniRef90	UniRef90_A0A414AP34	NA	NA
UHGV-0067873_16	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0067873_16	Pfam	PF14265	NA	DUF4355
UHGV-0067873_16	Structural annotation	PF14265	NA	NA
UHGV-0067873_18	PHROG	phrog_35328	NA	unknown function
UHGV-0067873_19	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0067873_19	UniRef90	UniRef90_A0A174H0Z2	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0067873_19	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0067873_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0067873_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0067873_19	COG	COG2369	NA	NA
UHGV-0067873_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0067873_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0067873_20	UniRef90	UniRef90_A0A6N2YBG5	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0067873_20	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0067873_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0067873_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0067873_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0067873_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0067873_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0067873_21	UniRef90	UniRef90_G5FH89	Phage terminase large subunit	NA
UHGV-0067873_21	eggNOG-mapper	742733.HMPREF9469_01827	Terminase RNAseH like domain	NA
UHGV-0067873_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0067873_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0067873_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0067873_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0067873_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0067873_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0067873_22	UniRef90	UniRef90_A0A174GY31	Phage-like protein	NA
UHGV-0067873_22	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0067873_22	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0067873_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0067873_22	Structural annotation	PF07141	NA	NA
UHGV-0067873_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0067873_24	UniRef90	UniRef90_A0A174H087	ECF subfamily RNA polymerase sigma-24 subunit	NA
UHGV-0067873_24	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0067873_24	Structural annotation	PF02996	NA	NA
UHGV-0067873_25	UniRef90	UniRef90_UPI001BAF0D80	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0067873_25	eggNOG-mapper	742733.HMPREF9469_01838	sulfate reduction	NA
UHGV-0067873_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0067873_26	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0067873_26	UniRef90	UniRef90_UPI00189D46F4	DNA cytosine methyltransferase	NA
UHGV-0067873_26	eggNOG-mapper	1291050.JAGE01000001_gene2906	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0067873_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0067873_26	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0067873_28	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0067873_28	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0067873_28	UniRef90	UniRef90_A0A174H0Z9	Helicase	NA
UHGV-0067873_28	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0067873_28	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0067873_28	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0067873_28	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0067873_28	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0067873_28	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0067873_29	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0067873_29	UniRef90	UniRef90_A0A174H0X1	Holliday junction resolvase RecU	NA
UHGV-0067873_29	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-0067873_31	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0067873_31	UniRef90	UniRef90_A0A174GVB6	Superfamily II helicase	NA
UHGV-0067873_31	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-0067873_31	Pfam	PF06048	NA	DUF927
UHGV-0067873_31	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0067873_31	COG	COG5519	NA	NA
UHGV-0067873_31	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0067873_32	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0067873_32	PHROG	phrog_11992	NA	unknown function
UHGV-0067873_32	UniRef90	UniRef90_A0A174H014	DNA primase (Bacterial type)	NA
UHGV-0067873_32	eggNOG-mapper	1232453.BAIF02000010_gene3339	DNA primase activity	NA
UHGV-0067873_32	PADLOC	drt-UG29	DRT	DRT
UHGV-0067873_32	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0067873_32	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0067873_32	Structural annotation	PF01807	NA	NA
UHGV-0067873_33	PHROG	phrog_18107	NA	unknown function
UHGV-0067873_33	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0067873_33	Structural annotation	PF05037	NA	NA
UHGV-0067873_34	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0067873_34	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0067873_34	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0067873_34	Pfam	PF13479	AAA domain	AAA_24
UHGV-0067873_34	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0067873_35	eggNOG-mapper	1449050.JNLE01000005_gene3947	NA	NA
UHGV-0067873_37	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0067873_37	UniRef90	UniRef90_A0A174GZA7	Siphovirus Gp157	NA
UHGV-0067873_37	eggNOG-mapper	1449050.JNLE01000005_gene3949	Siphovirus Gp157	NA
UHGV-0067873_37	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0067873_37	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0067873_40	PHROG	phrog_6058	NA	unknown function
UHGV-0067873_42	UniRef90	UniRef90_A0A3A9ESG6	XRE family transcriptional regulator	NA
UHGV-0067873_42	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0067873_42	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0067873_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0067873_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0067873_43	UniRef90	UniRef90_G5FHB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0067873_43	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0067873_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067873_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0067873_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0067873_43	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0067873_44	PHROG	phrog_10934	NA	unknown function
UHGV-0067873_44	UniRef90	UniRef90_A0A174GWI7	Gp2	NA
UHGV-0067873_44	eggNOG-mapper	911104.AEKT01000044_gene1034	NA	NA
UHGV-0067873_45	KOfam	K14059	int; integrase	NA
UHGV-0067873_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0067873_45	UniRef90	UniRef90_G5FHB3	Tyr recombinase domain-containing protein	NA
UHGV-0067873_45	eggNOG-mapper	585394.RHOM_14030	Belongs to the 'phage' integrase family	NA
UHGV-0067873_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0067873_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0067873_45	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0067873_46	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0067873_46	UniRef90	UniRef90_G5FH61	HTH cro/C1-type domain-containing protein	NA
UHGV-0067873_46	eggNOG-mapper	397288.C806_04335	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0067873_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0067873_46	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0067873_46	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0067873_47	eggNOG-mapper	1232447.BAHW02000069_gene3429	NA	NA
UHGV-0067873_51	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0067873_51	PHROG	phrog_2649	endolysin	lysis
UHGV-0067873_51	UniRef90	UniRef90_A0A174GZ78	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0067873_51	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0067873_51	AcrCatalog	cluster_9940	NA	NA
UHGV-0067873_51	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0067873_51	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0067873_51	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0067873_52	PHROG	phrog_1129	holin	lysis
UHGV-0067873_52	UniRef90	UniRef90_A0A2N0KEV2	Enolase	NA
UHGV-0067873_52	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0067873_52	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0067873_52	Structural annotation	PF06946	NA	NA
UHGV-0067873_53	PHROG	phrog_1863	NA	unknown function
UHGV-0067873_53	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0067873_53	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0067873_54	Structural annotation	NF040910	NA	NA
UHGV-0067873_55	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0067873_56	UniRef90	UniRef90_UPI001D0972A8	pyocin knob domain-containing protein	NA
UHGV-0067873_57	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0067873_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0067873_57	UniRef90	UniRef90_A0A174H2W6	Integrase family protein	NA
UHGV-0067873_57	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0067873_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0067873_57	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0067873_57	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA