UHGV-0067879

Genome information

Genome length 19,112 bps

CDS count 23

Completeness 54.02% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067879
vOTU ID	vOTU-037867
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_81472
BioSample	SAMEA2338714
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.76
Jumbo phage	No

Genome content
Genome length	19,112 bps
GC content	30.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	90.30%
Average CDS length	752.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067879_3	PHROG	phrog_1066	NA	unknown function
UHGV-0067879_3	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0067879_3	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0067879_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0067879_4	UniRef90	UniRef90_W9E9N7	Terminase	NA
UHGV-0067879_4	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0067879_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0067879_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0067879_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0067879_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0067879_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0067879_5	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-0067879_5	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0067879_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0067879_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0067879_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0067879_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0067879_6	KOfam	K06904	NA	NA
UHGV-0067879_6	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0067879_6	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0067879_6	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-0067879_6	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0067879_6	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0067879_6	COG	COG3740	Phage head maturation protease	NA
UHGV-0067879_6	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0067879_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0067879_7	UniRef90	UniRef90_A0A1W2AS24	Phage major capsid protein, HK97 family	NA
UHGV-0067879_7	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-0067879_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0067879_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0067879_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0067879_8	PHROG	phrog_5223	neck protein	connector
UHGV-0067879_8	UniRef90	UniRef90_A0A8J7KDM6	DNA-packaging protein	NA
UHGV-0067879_8	eggNOG-mapper	1382358.JHVN01000024_gene1709	NA	NA
UHGV-0067879_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0067879_9	UniRef90	UniRef90_A0A1I0B5R1	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0067879_9	eggNOG-mapper	272626.lin2574	head-tail adaptor	NA
UHGV-0067879_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0067879_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0067879_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0067879_10	UniRef90	UniRef90_UPI000C82E4F9	HK97 gp10 family phage protein	NA
UHGV-0067879_10	eggNOG-mapper	1123315.AUIP01000001_gene1428	NA	NA
UHGV-0067879_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0067879_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0067879_11	eggNOG-mapper	1158604.I591_01762	NA	NA
UHGV-0067879_11	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0067879_12	PHROG	phrog_88	major tail protein	tail
UHGV-0067879_12	UniRef90	UniRef90_UPI001CBE6475	phage tail protein	NA
UHGV-0067879_12	eggNOG-mapper	365048.Q0H233_9CAUD	NA	NA
UHGV-0067879_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0067879_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0067879_13	PHROG	phrog_709	NA	unknown function
UHGV-0067879_13	Structural annotation	PF11836	NA	NA
UHGV-0067879_14	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0067879_14	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0067879_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0067879_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0067879_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0067879_15	PHROG	phrog_13363	NA	unknown function
UHGV-0067879_18	PHROG	phrog_7064	tail protein	tail
UHGV-0067879_20	PHROG	phrog_937	hemolysin	other
UHGV-0067879_21	PHROG	phrog_15303	NA	unknown function
UHGV-0067879_21	eggNOG-mapper	394503.Ccel_3271	NA	NA
UHGV-0067879_23	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0067879_23	UniRef90	UniRef90_R7LPC2	Peptidoglycan-binding domain 1 protein	NA
UHGV-0067879_23	eggNOG-mapper	195103.CPF_0587	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0067879_23	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0067879_23	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0067879_23	COG	COG3807	SH3-like domain	NA
UHGV-0067879_23	Structural annotation	PF03412, PF18342, PF06347, NF040670, NF033920, COG3807, COG3271	NA	NA