UHGV-0068058

Genome information

Genome length 43,471 bps

CDS count 80

Completeness 78.54% (medium-quality)

geNomad score 0.9640

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068058
vOTU ID	vOTU-026224
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_113962
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	7
Recoded stop codon	No

Viral signal
geNomad score	0.9640
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.67
Jumbo phage	No

Genome content
Genome length	43,471 bps
GC content	46.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	90.47%
Average CDS length	493.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068058_1	eggNOG-mapper	1122971.BAME01000002_gene264	COG3093 Plasmid maintenance system antidote protein	NA
UHGV-0068058_1	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0068058_3	Structural annotation	PF11320	NA	NA
UHGV-0068058_4	PHROG	phrog_6305	tail protein	tail
UHGV-0068058_4	UniRef90	UniRef90_C6ZA45	Putative phage tail component domain protein	NA
UHGV-0068058_4	eggNOG-mapper	1347393.HG726021_gene470	NA	NA
UHGV-0068058_4	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-0068058_5	PHROG	phrog_14295	NA	unknown function
UHGV-0068058_5	UniRef90	UniRef90_UPI001297521A	tape measure protein	NA
UHGV-0068058_5	eggNOG-mapper	762982.HMPREF9442_01189	NA	NA
UHGV-0068058_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0068058_7	PHROG	phrog_13669	NA	unknown function
UHGV-0068058_7	eggNOG-mapper	585543.HMPREF0969_03352	NA	NA
UHGV-0068058_7	Structural annotation	PF20336	NA	NA
UHGV-0068058_8	PHROG	phrog_14600	NA	unknown function
UHGV-0068058_8	eggNOG-mapper	445970.ALIPUT_01653	NA	NA
UHGV-0068058_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0068058_9	PHROG	phrog_5597	NA	unknown function
UHGV-0068058_9	eggNOG-mapper	1268240.ATFI01000021_gene159	NA	NA
UHGV-0068058_9	Structural annotation	PF12691, TIGR01633	NA	NA
UHGV-0068058_10	PHROG	phrog_5377	NA	unknown function
UHGV-0068058_10	eggNOG-mapper	762982.HMPREF9442_01188	NA	NA
UHGV-0068058_11	PHROG	phrog_16482	NA	unknown function
UHGV-0068058_11	eggNOG-mapper	585543.HMPREF0969_03358	NA	NA
UHGV-0068058_11	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0068058_12	PHROG	phrog_7935	NA	unknown function
UHGV-0068058_12	eggNOG-mapper	435591.BDI_0886	NA	NA
UHGV-0068058_12	Pfam	PF20449	NA	DUF6706
UHGV-0068058_12	Structural annotation	PF20449	NA	NA
UHGV-0068058_13	PHROG	phrog_29	major head protein	head and packaging
UHGV-0068058_13	UniRef90	UniRef90_A0A316NWE1	Major capsid protein E	NA
UHGV-0068058_13	eggNOG-mapper	445970.ALIPUT_00704	NA	NA
UHGV-0068058_13	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0068058_13	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-0068058_14	eggNOG-mapper	888059.HMPREF9071_2141	Head fiber protein	NA
UHGV-0068058_14	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0068058_15	PHROG	phrog_5824	NA	unknown function
UHGV-0068058_15	eggNOG-mapper	445970.ALIPUT_00706	NA	NA
UHGV-0068058_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0068058_16	UniRef90	UniRef90_UPI00189D88D6	phage portal protein	NA
UHGV-0068058_16	eggNOG-mapper	445970.ALIPUT_01192	phage portal protein, SPP1	NA
UHGV-0068058_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0068058_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0068058_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0068058_17	UniRef90	UniRef90_A0A5B5VJH5	Phage terminase large subunit	NA
UHGV-0068058_17	eggNOG-mapper	445970.ALIPUT_01193	domain protein	NA
UHGV-0068058_17	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0068058_17	COG	COG5410	NA	NA
UHGV-0068058_17	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0068058_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0068058_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0068058_18	UniRef90	UniRef90_A0A316NYX6	Terminase small subunit	NA
UHGV-0068058_18	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-0068058_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0068058_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0068058_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0068058_19	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-0068058_19	PHROG	phrog_10078	NA	unknown function
UHGV-0068058_19	UniRef90	UniRef90_UPI001C5C810C	Type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0068058_19	eggNOG-mapper	1123008.KB905710_gene716	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0068058_19	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0068058_19	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0068058_19	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0068058_19	Structural annotation	PF02604, NF008499, COG2161	NA	NA
UHGV-0068058_20	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0068058_20	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0068058_20	UniRef90	UniRef90_UPI001C5C32B1	Txe/YoeB family addiction module toxin	NA
UHGV-0068058_20	eggNOG-mapper	762968.HMPREF9441_03500	Txe YoeB family	NA
UHGV-0068058_20	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0068058_20	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0068058_20	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0068058_20	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0068058_22	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0068058_25	PHROG	phrog_38431	NA	unknown function
UHGV-0068058_25	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0068058_25	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0068058_27	PHROG	phrog_28898	NA	unknown function
UHGV-0068058_27	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-0068058_27	Structural annotation	PF10781	NA	NA
UHGV-0068058_28	PHROG	phrog_31654	NA	unknown function
UHGV-0068058_28	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0068058_29	PHROG	phrog_16490	NA	unknown function
UHGV-0068058_29	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0068058_29	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0068058_35	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-0068058_35	UniRef90	UniRef90_A0A316NWF8	DNA-binding protein	NA
UHGV-0068058_35	eggNOG-mapper	585502.HMPREF0645_0768	ORF6N domain	NA
UHGV-0068058_35	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0068058_35	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0068058_35	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0068058_36	UniRef90	UniRef90_UPI001561F3B8	helix-turn-helix domain-containing protein	NA
UHGV-0068058_36	eggNOG-mapper	1348583.ATLH01000022_gene2306	Transcriptional regulator	NA
UHGV-0068058_36	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0068058_37	eggNOG-mapper	1284775.HMPREF1640_07290	NA	NA
UHGV-0068058_37	Structural annotation	PF19555	NA	NA
UHGV-0068058_38	KOfam	K01994	gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein	NA
UHGV-0068058_38	UniRef90	UniRef90_A0A396M3W3	LuxR family transcriptional regulator	NA
UHGV-0068058_38	eggNOG-mapper	1235803.C825_03381	helix_turn_helix, Lux Regulon	NA
UHGV-0068058_38	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0068058_39	Structural annotation	PF13973, PF17384, COG1862	NA	NA
UHGV-0068058_42	PHROG	phrog_17289	NA	unknown function
UHGV-0068058_48	UniRef90	UniRef90_A0A645DB76	Fib_succ_major domain-containing protein	NA
UHGV-0068058_48	Pfam	PF03781	Sulfatase-modifying factor enzyme 1	FGE-sulfatase
UHGV-0068058_48	Structural annotation	PF09603, TIGR02145	NA	NA
UHGV-0068058_49	eggNOG-mapper	1122605.KB893643_gene671	NA	NA
UHGV-0068058_50	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0068058_50	UniRef90	UniRef90_A0A316PEM7	PDDEXK_1 domain-containing protein	NA
UHGV-0068058_50	eggNOG-mapper	313596.RB2501_01430	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0068058_50	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0068058_50	COG	COG2887	RecB family exonuclease	NA
UHGV-0068058_51	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0068058_51	eggNOG-mapper	888059.HMPREF9071_2106	NA	NA
UHGV-0068058_52	PHROG	phrog_15768	NA	unknown function
UHGV-0068058_52	UniRef90	UniRef90_B0MZW4	DnaD domain protein	NA
UHGV-0068058_52	eggNOG-mapper	1121100.JCM6294_532	DnaD domain protein	NA
UHGV-0068058_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0068058_52	Structural annotation	PF08222, NF033788, COG0640	NA	NA
UHGV-0068058_53	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0068058_53	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0068058_53	UniRef90	UniRef90_A0A316PKQ3	Replicative DNA helicase	NA
UHGV-0068058_53	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0068058_53	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0068058_53	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0068058_53	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0068058_53	COG	COG0305	Replicative DNA helicase	NA
UHGV-0068058_53	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0068058_56	PHROG	phrog_1934	NA	unknown function
UHGV-0068058_56	UniRef90	UniRef90_UPI0003030191	zinc-finger-containing protein	NA
UHGV-0068058_56	eggNOG-mapper	1120951.AUBG01000007_gene19	zinc-finger-containing domain	NA
UHGV-0068058_56	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0068058_56	Structural annotation	PF11672	NA	NA
UHGV-0068058_57	Structural annotation	NF011227	NA	NA
UHGV-0068058_58	Structural annotation	PF16007, NF038251, COG1695	NA	NA
UHGV-0068058_59	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0068058_59	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0068058_59	UniRef90	UniRef90_UPI001B3341D6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0068058_59	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0068058_59	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0068058_59	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0068058_59	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0068058_59	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0068058_59	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0068058_60	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0068058_60	UniRef90	UniRef90_A0A143XLK5	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	NA
UHGV-0068058_60	eggNOG-mapper	555500.I215_01798	Methyltransferase domain	NA
UHGV-0068058_60	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0068058_60	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0068058_60	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0068058_60	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0068058_60	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0068058_62	UniRef90	UniRef90_UPI0008DB3248	NA	NA
UHGV-0068058_62	eggNOG-mapper	1211813.CAPH01000002_gene1135	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0068058_62	Pfam	PF09603	Fibrobacter succinogenes major domain (Fib_succ_major)	Fib_succ_major
UHGV-0068058_62	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0068058_63	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0068058_63	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0068058_63	UniRef90	UniRef90_A0A5B5VP29	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0068058_63	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0068058_63	PADLOC	SspD_00001	SspD	SSP
UHGV-0068058_63	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0068058_63	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0068058_63	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0068058_67	PHROG	phrog_8684	NA	unknown function
UHGV-0068058_67	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-0068058_67	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0068058_67	Pfam	PF09643	YopX protein	YopX
UHGV-0068058_67	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0068058_67	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0068058_68	PHROG	phrog_874	NA	unknown function
UHGV-0068058_68	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0068058_68	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0068058_69	PHROG	phrog_1273	NA	unknown function
UHGV-0068058_69	eggNOG-mapper	221029.Q76H36_9CAUD	NA	NA
UHGV-0068058_70	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-0068058_70	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0068058_70	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0068058_71	PHROG	phrog_824	NA	unknown function
UHGV-0068058_71	UniRef90	UniRef90_A0A845KGP8	VRR-NUC domain-containing protein	NA
UHGV-0068058_71	eggNOG-mapper	445970.ALIPUT_02669	VRR_NUC	NA
UHGV-0068058_71	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0068058_75	PHROG	phrog_15412	NA	unknown function
UHGV-0068058_75	UniRef90	UniRef90_UPI000D100077	YbjQ family protein	NA
UHGV-0068058_75	eggNOG-mapper	1336803.PHEL49_2255	Putative heavy-metal-binding	NA
UHGV-0068058_75	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0068058_75	COG	COG0393	NA	NA
UHGV-0068058_75	HAMAP	MF_00338	UPF0145 protein YbjQ [ybjQ]	NA
UHGV-0068058_75	Structural annotation	PF01906, MF_00338, NF002224, COG0393	NA	NA
UHGV-0068058_78	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0068058_78	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0068058_78	UniRef90	UniRef90_UPI001898E950	phage antirepressor	NA
UHGV-0068058_78	eggNOG-mapper	1111121.HMPREF1247_0813	BRO family, N-terminal domain	NA
UHGV-0068058_78	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0068058_78	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0068058_78	COG	COG3617	Prophage antirepressor	NA
UHGV-0068058_78	Structural annotation	PF02498, PF03374, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0068058_80	eggNOG-mapper	742725.HMPREF9450_02131	NA	NA