UHGV-0068423

Genome information

vOTU vOTU-020980

Genome length 19,048 bps

CDS count 28

Completeness 59.29% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068423
vOTU ID	vOTU-020980
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_117735
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.57
Jumbo phage	No

Genome content
Genome length	19,048 bps
GC content	37.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	89.82%
Average CDS length	613.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068423_3	PHROG	phrog_2150	terminase	head and packaging
UHGV-0068423_3	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0068423_3	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0068423_3	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0068423_3	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0068423_4	PHROG	phrog_199	holin	lysis
UHGV-0068423_4	UniRef90	UniRef90_A0A843HL15	Phage holin family protein	NA
UHGV-0068423_4	eggNOG-mapper	877414.ATWA01000062_gene1614	Bacteriophage holin family	NA
UHGV-0068423_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0068423_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0068423_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0068423_5	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0068423_5	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0068423_5	UniRef90	UniRef90_A0A348SZW4	Peptidase_M23 domain-containing protein	NA
UHGV-0068423_5	eggNOG-mapper	293614.A1C_05580	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0068423_5	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0068423_5	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0068423_5	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0068423_9	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0068423_9	UniRef90	UniRef90_J9H241	Major head protein	NA
UHGV-0068423_9	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0068423_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0068423_10	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0068423_10	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0068423_10	UniRef90	UniRef90_A0A4Q0U6L7	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0068423_10	eggNOG-mapper	1440053.JOEI01000004_gene3872	peptidase	NA
UHGV-0068423_10	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0068423_10	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0068423_10	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0068423_11	PHROG	phrog_2248	tail protein	tail
UHGV-0068423_11	UniRef90	UniRef90_A0A843HU95	Caud_tail_N domain-containing protein	NA
UHGV-0068423_11	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0068423_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0068423_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0068423_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0068423_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0068423_12	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0068423_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0068423_12	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0068423_13	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0068423_13	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0068423_16	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0068423_17	Structural annotation	PF12708, TIGR04247, COG3420	NA	NA
UHGV-0068423_18	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0068423_18	UniRef90	UniRef90_A0A1V5S9H8	Putative septation protein SpoVG	NA
UHGV-0068423_18	eggNOG-mapper	1089553.Tph_c07250	Could be involved in septation	NA
UHGV-0068423_18	Pfam	PF04026	SpoVG	SpoVG
UHGV-0068423_18	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0068423_18	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0068423_19	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0068423_19	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0068423_28	Structural annotation	PF17548	NA	NA