UHGV-0068439

Genome information

Genome length 40,855 bps

CDS count 77

Completeness 100.00% (complete)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068439
vOTU ID	vOTU-005264
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_127596
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.89
Jumbo phage	No

Genome content
Genome length	40,855 bps
GC content	49.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	91.43%
Average CDS length	489.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068439_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0068439_2	PHROG	phrog_435	endolysin	lysis
UHGV-0068439_2	UniRef90	UniRef90_A0A1C6B3W5	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0068439_2	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0068439_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0068439_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0068439_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0068439_4	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0068439_4	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0068439_5	PHROG	phrog_3754	NA	unknown function
UHGV-0068439_5	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0068439_6	PHROG	phrog_21718	NA	unknown function
UHGV-0068439_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0068439_7	PHROG	phrog_22984	NA	unknown function
UHGV-0068439_8	PHROG	phrog_16490	NA	unknown function
UHGV-0068439_8	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0068439_9	PHROG	phrog_20016	NA	unknown function
UHGV-0068439_9	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0068439_9	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0068439_9	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0068439_11	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0068439_12	KOfam	K14059	int; integrase	NA
UHGV-0068439_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0068439_12	UniRef90	UniRef90_A0A174KS65	Integrase	NA
UHGV-0068439_12	eggNOG-mapper	697329.Rumal_0660	Belongs to the 'phage' integrase family	NA
UHGV-0068439_12	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0068439_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0068439_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0068439_12	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0068439_13	PHROG	phrog_7115	NA	unknown function
UHGV-0068439_13	UniRef90	UniRef90_G9YSE2	bPH_1 domain-containing protein	NA
UHGV-0068439_13	eggNOG-mapper	1121344.JHZO01000003_gene733	Bacterial PH domain	NA
UHGV-0068439_13	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0068439_13	Structural annotation	PF08000, COG3402	NA	NA
UHGV-0068439_14	UniRef90	UniRef90_A0A1L4C2N4	DNA-binding protein	NA
UHGV-0068439_14	eggNOG-mapper	1408323.JQKK01000005_gene152	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0068439_15	PHROG	phrog_87	metallo-protease	other
UHGV-0068439_15	UniRef90	UniRef90_A0A1Y3RG05	Peptidase_M78 domain-containing protein	NA
UHGV-0068439_15	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0068439_15	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0068439_15	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0068439_15	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0068439_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0068439_16	UniRef90	UniRef90_A0A174FRM3	Helix-turn-helix domain	NA
UHGV-0068439_16	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0068439_16	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0068439_16	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0068439_16	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0068439_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0068439_17	UniRef90	UniRef90_A0A412EXN2	XRE family transcriptional regulator	NA
UHGV-0068439_17	eggNOG-mapper	1211814.CAPG01000074_gene3486	Helix-turn-helix XRE-family like proteins	NA
UHGV-0068439_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0068439_17	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0068439_17	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0068439_18	UniRef90	UniRef90_A0A3D2D5G1	DNA-binding protein	NA
UHGV-0068439_18	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0068439_21	Structural annotation	PF13560	NA	NA
UHGV-0068439_22	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0068439_22	UniRef90	UniRef90_A0A8J6M3C9	AAA family ATPase	NA
UHGV-0068439_22	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0068439_22	Pfam	PF13479	AAA domain	AAA_24
UHGV-0068439_22	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0068439_24	PHROG	phrog_18107	NA	unknown function
UHGV-0068439_24	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0068439_24	Structural annotation	PF05037	NA	NA
UHGV-0068439_25	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0068439_25	UniRef90	UniRef90_A0A1C5W9A3	ERCC4 domain-containing protein	NA
UHGV-0068439_25	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0068439_25	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0068439_25	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0068439_25	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0068439_28	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0068439_28	UniRef90	UniRef90_A0A174F2L9	NA	NA
UHGV-0068439_28	eggNOG-mapper	1121947.AUHK01000002_gene919	DnaD domain protein	NA
UHGV-0068439_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0068439_29	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0068439_29	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0068439_29	UniRef90	UniRef90_A0A8J6J2A5	AAA family ATPase	NA
UHGV-0068439_29	eggNOG-mapper	397290.C810_01519	NA	NA
UHGV-0068439_29	Pfam	PF13481	AAA domain	AAA_25
UHGV-0068439_29	COG	COG0305	Replicative DNA helicase	NA
UHGV-0068439_29	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0068439_31	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0068439_31	UniRef90	UniRef90_A0A4D7ASE3	DNA cytosine methyltransferase	NA
UHGV-0068439_31	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0068439_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0068439_31	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0068439_32	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0068439_32	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0068439_32	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0068439_33	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0068439_35	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0068439_35	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0068439_36	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0068439_36	UniRef90	UniRef90_A0A846J416	Sugar-phospahte nucleotidyltransferase	NA
UHGV-0068439_36	eggNOG-mapper	1235793.C809_00185	NA	NA
UHGV-0068439_36	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0068439_38	Structural annotation	NF011227	NA	NA
UHGV-0068439_40	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0068439_41	PHROG	phrog_37865	NA	unknown function
UHGV-0068439_47	eggNOG-mapper	1298920.KI911353_gene2737	NA	NA
UHGV-0068439_48	PHROG	phrog_8684	NA	unknown function
UHGV-0068439_48	UniRef90	UniRef90_A0A810QGV2	YopX domain-containing protein	NA
UHGV-0068439_48	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0068439_48	Pfam	PF09643	YopX protein	YopX
UHGV-0068439_48	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0068439_50	UniRef90	UniRef90_A0A1C6IRM5	Transposase	NA
UHGV-0068439_50	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0068439_50	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0068439_51	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0068439_51	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0068439_52	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0068439_52	UniRef90	UniRef90_A0A8J6MDX5	Helix-turn-helix domain-containing protein	NA
UHGV-0068439_52	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0068439_52	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0068439_52	Structural annotation	PF07141	NA	NA
UHGV-0068439_53	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0068439_53	PHROG	phrog_10250	NA	unknown function
UHGV-0068439_53	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0068439_53	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0068439_53	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0068439_53	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0068439_53	COG	COG1783	Phage terminase large subunit	NA
UHGV-0068439_53	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-0068439_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0068439_54	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0068439_54	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0068439_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0068439_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0068439_55	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0068439_55	UniRef90	UniRef90_A0A1C7FSE6	Phage_Mu_F domain-containing protein	NA
UHGV-0068439_55	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0068439_55	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0068439_55	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0068439_55	COG	COG2369	NA	NA
UHGV-0068439_55	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0068439_56	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0068439_56	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0068439_56	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0068439_56	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0068439_56	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0068439_56	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0068439_59	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0068439_59	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0068439_59	Structural annotation	PF06810	NA	NA
UHGV-0068439_60	PHROG	phrog_544	major head protein	head and packaging
UHGV-0068439_60	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0068439_60	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0068439_60	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0068439_61	PHROG	phrog_34916	tail fiber protein	tail
UHGV-0068439_61	UniRef90	UniRef90_UPI0018A8F63F	collagen-like protein	NA
UHGV-0068439_61	eggNOG-mapper	1203606.HMPREF1526_01905	Collagen triple helix repeat (20 copies)	NA
UHGV-0068439_61	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0068439_61	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0068439_62	PHROG	phrog_1236	head protein	head and packaging
UHGV-0068439_63	PHROG	phrog_17977	NA	unknown function
UHGV-0068439_63	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0068439_63	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0068439_64	PHROG	phrog_1233	NA	unknown function
UHGV-0068439_64	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0068439_64	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0068439_65	Structural annotation	PF11367	NA	NA
UHGV-0068439_66	PHROG	phrog_885	major tail protein	tail
UHGV-0068439_66	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0068439_66	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0068439_66	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0068439_67	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0068439_69	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0068439_69	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0068439_69	COG	COG1511	NA	NA
UHGV-0068439_70	eggNOG-mapper	1203606.HMPREF1526_00969	NA	NA
UHGV-0068439_70	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0068439_71	PHROG	phrog_13879	NA	unknown function
UHGV-0068439_71	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0068439_71	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0068439_72	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0068439_72	Structural annotation	PF00354	NA	NA
UHGV-0068439_73	UniRef90	UniRef90_A0A096B066	Mtd_N domain-containing protein	NA
UHGV-0068439_73	eggNOG-mapper	1226322.HMPREF1545_02881	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0068439_73	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0068439_74	eggNOG-mapper	657322.FPR_21910	NA	NA
UHGV-0068439_75	PHROG	phrog_937	hemolysin	other
UHGV-0068439_75	eggNOG-mapper	445972.ANACOL_01873	NA	NA
UHGV-0068439_76	PHROG	phrog_1129	holin	lysis
UHGV-0068439_76	UniRef90	UniRef90_A0A416QZD1	Enolase	NA
UHGV-0068439_76	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0068439_76	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0068439_76	Structural annotation	PF06946	NA	NA