UHGV-0068470

Genome information

vOTU vOTU-020548

Genome length 16,948 bps

CDS count 22

Completeness 89.95% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068470
vOTU ID	vOTU-020548
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_128217
BioSample	SAMEA2737780
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.97
Jumbo phage	No

Genome content
Genome length	16,948 bps
GC content	35.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	90.86%
Average CDS length	700.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068470_1	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0068470_1	COG	COG5434	Polygalacturonase	NA
UHGV-0068470_1	Structural annotation	PF12708, PF14606, PF01664, TIGR03808, NF007819, COG5434, COG3240	NA	NA
UHGV-0068470_2	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0068470_2	UniRef90	UniRef90_Q37892	Proximal tail tube connector protein	NA
UHGV-0068470_2	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0068470_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0068470_3	UniRef90	UniRef90_P04332	Portal protein	NA
UHGV-0068470_3	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0068470_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0068470_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0068470_4	PHROG	phrog_2248	tail protein	tail
UHGV-0068470_4	UniRef90	UniRef90_A0A843HKP3	Caud_tail_N domain-containing protein	NA
UHGV-0068470_4	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0068470_4	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0068470_4	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0068470_4	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0068470_5	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0068470_5	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0068470_5	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0068470_5	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0068470_8	PHROG	phrog_11037	NA	unknown function
UHGV-0068470_8	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0068470_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0068470_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0068470_8	Structural annotation	PF18013	NA	NA
UHGV-0068470_9	PHROG	phrog_14030	NA	unknown function
UHGV-0068470_9	UniRef90	UniRef90_U2W578	Cpl-7 lysozyme protein	NA
UHGV-0068470_9	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0068470_9	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0068470_9	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0068470_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0068470_9	Structural annotation	PF05382, PF08230, NF033742	NA	NA
UHGV-0068470_10	PHROG	phrog_199	holin	lysis
UHGV-0068470_10	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-0068470_10	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0068470_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0068470_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0068470_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0068470_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0068470_11	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0068470_11	eggNOG-mapper	1162304.I3PV13_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0068470_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0068470_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0068470_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0068470_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0068470_12	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0068470_12	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0068470_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0068470_12	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0068470_14	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0068470_14	Structural annotation	PF17427	NA	NA
UHGV-0068470_16	Structural annotation	PF07865	NA	NA
UHGV-0068470_17	Structural annotation	PF06004, MF_00436, NF008636, COG4568	NA	NA
UHGV-0068470_18	Structural annotation	PF17548	NA	NA
UHGV-0068470_19	Structural annotation	PF06004, MF_00436, NF033216, COG1923	NA	NA