UHGV-0068501

Genome information

Genome length 33,370 bps

CDS count 55

Completeness 96.43% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068501
vOTU ID	vOTU-007568
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_119298
BioSample	SAMEA2580292
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.55
Jumbo phage	No

Genome content
Genome length	33,370 bps
GC content	42.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.33%
Average CDS length	548.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068501_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0068501_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0068501_1	UniRef90	UniRef90_A0A6N9JS36	Helix-turn-helix domain-containing protein	NA
UHGV-0068501_1	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0068501_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0068501_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0068501_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0068501_2	UniRef90	UniRef90_UPI00156E5A24	helix-turn-helix transcriptional regulator	NA
UHGV-0068501_2	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-0068501_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0068501_2	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0068501_4	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-0068501_8	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0068501_8	UniRef90	UniRef90_UPI00156DCAF3	Lar family restriction alleviation protein	NA
UHGV-0068501_8	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0068501_8	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0068501_8	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0068501_8	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0068501_8	Structural annotation	PF14354	NA	NA
UHGV-0068501_9	PHROG	phrog_23707	NA	unknown function
UHGV-0068501_9	UniRef90	UniRef90_UPI00156F2BF7	alanine racemase	NA
UHGV-0068501_9	eggNOG-mapper	411483.FAEPRAA2165_01889	NA	NA
UHGV-0068501_10	Structural annotation	PF14282	NA	NA
UHGV-0068501_11	PHROG	phrog_421	NA	unknown function
UHGV-0068501_11	UniRef90	UniRef90_A0A3R7BR33	NA	NA
UHGV-0068501_11	eggNOG-mapper	1235800.C819_00518	NA	NA
UHGV-0068501_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0068501_14	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0068501_14	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0068501_16	PHROG	phrog_824	NA	unknown function
UHGV-0068501_16	UniRef90	UniRef90_UPI0015713852	VRR-NUC domain-containing protein	NA
UHGV-0068501_16	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0068501_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0068501_17	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0068501_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0068501_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0068501_18	UniRef90	UniRef90_UPI00156DD98C	ParA family protein	NA
UHGV-0068501_18	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0068501_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0068501_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0068501_18	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0068501_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0068501_20	PHROG	phrog_15982	NA	unknown function
UHGV-0068501_20	UniRef90	UniRef90_UPI0015702B3C	ParB/RepB/Spo0J family partition protein	NA
UHGV-0068501_20	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0068501_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0068501_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0068501_20	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0068501_21	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0068501_21	UniRef90	UniRef90_UPI00156F191E	NUMOD4 domain-containing protein	NA
UHGV-0068501_21	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0068501_21	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0068501_22	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0068501_22	UniRef90	UniRef90_UPI00156E25CF	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0068501_22	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0068501_22	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0068501_22	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0068501_25	PHROG	phrog_6568	NA	unknown function
UHGV-0068501_26	PHROG	phrog_11237	NA	unknown function
UHGV-0068501_26	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0068501_28	UniRef90	UniRef90_UPI00156EF43B	chemotaxis protein	NA
UHGV-0068501_28	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0068501_28	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0068501_30	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0068501_30	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-0068501_30	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0068501_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0068501_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0068501_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0068501_31	UniRef90	UniRef90_UPI00156EA6D8	terminase large subunit	NA
UHGV-0068501_31	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0068501_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0068501_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0068501_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0068501_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0068501_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0068501_32	UniRef90	UniRef90_UPI00156EE6C1	phage portal protein	NA
UHGV-0068501_32	eggNOG-mapper	1220589.CD32_01735	portal protein	NA
UHGV-0068501_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0068501_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0068501_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0068501_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0068501_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0068501_33	UniRef90	UniRef90_UPI00156DC26F	Clp protease ClpP	NA
UHGV-0068501_33	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0068501_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0068501_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0068501_33	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0068501_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0068501_34	UniRef90	UniRef90_UPI00156ED36D	phage major capsid protein	NA
UHGV-0068501_34	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-0068501_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0068501_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0068501_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0068501_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0068501_35	PHROG	phrog_749	NA	unknown function
UHGV-0068501_35	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0068501_35	Structural annotation	PF05135	NA	NA
UHGV-0068501_36	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0068501_36	UniRef90	UniRef90_A0A1I3QJF5	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0068501_36	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-0068501_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0068501_37	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0068501_38	PHROG	phrog_5509	neck protein	connector
UHGV-0068501_38	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0068501_38	Structural annotation	TIGR01725	NA	NA
UHGV-0068501_39	UniRef90	UniRef90_UPI00156E655F	phage tail protein	NA
UHGV-0068501_39	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0068501_39	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0068501_40	PHROG	phrog_933	NA	unknown function
UHGV-0068501_40	UniRef90	UniRef90_UPI0015711BC6	SAP domain-containing protein	NA
UHGV-0068501_40	Pfam	PF02037	SAP domain	SAP
UHGV-0068501_40	Structural annotation	PF02037	NA	NA
UHGV-0068501_42	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0068501_42	UniRef90	UniRef90_UPI0015701281	phage tail tape measure protein	NA
UHGV-0068501_42	eggNOG-mapper	1336234.JAGN01000004_gene517	Phage-related minor tail protein	NA
UHGV-0068501_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0068501_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0068501_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0068501_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0068501_43	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0068501_43	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0068501_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0068501_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0068501_44	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0068501_44	eggNOG-mapper	411461.DORFOR_01177	NA	NA
UHGV-0068501_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0068501_44	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0068501_45	PHROG	phrog_13141	NA	unknown function
UHGV-0068501_45	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0068501_45	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0068501_45	Structural annotation	PF20747	NA	NA
UHGV-0068501_47	PHROG	phrog_12931	NA	unknown function
UHGV-0068501_47	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0068501_48	PHROG	phrog_1382	NA	unknown function
UHGV-0068501_48	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-0068501_49	PHROG	phrog_15594	NA	unknown function
UHGV-0068501_49	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0068501_49	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0068501_50	PHROG	phrog_31538	NA	unknown function
UHGV-0068501_50	eggNOG-mapper	742740.HMPREF9474_02274	NA	NA
UHGV-0068501_51	PHROG	phrog_13589	NA	unknown function
UHGV-0068501_51	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0068501_52	PHROG	phrog_13589	NA	unknown function
UHGV-0068501_52	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0068501_54	PHROG	phrog_4105	NA	unknown function
UHGV-0068501_54	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0068501_55	PHROG	phrog_443	holin	lysis
UHGV-0068501_55	UniRef90	UniRef90_UPI001570A68C	holin	NA
UHGV-0068501_55	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-0068501_55	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0068501_55	Structural annotation	PF16945	NA	NA