UHGV-0068519

Genome information

Genome length 25,654 bps

CDS count 30

Completeness 61.19% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068519
vOTU ID	vOTU-029569
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_119301
BioSample	SAMEA2580292
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.5
Jumbo phage	No

Genome content
Genome length	25,654 bps
GC content	41.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	95.42%
Average CDS length	819.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068519_1	eggNOG-mapper	553219.CAMSH0001_1671	NA	NA
UHGV-0068519_2	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0068519_2	UniRef90	UniRef90_UPI00189EABEF	phage terminase small subunit	NA
UHGV-0068519_2	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0068519_2	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0068519_2	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0068519_2	COG	COG5484	NA	NA
UHGV-0068519_2	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0068519_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0068519_3	PHROG	phrog_10250	NA	unknown function
UHGV-0068519_3	UniRef90	UniRef90_A0A173WM22	Phage terminase, large subunit, PBSX family	NA
UHGV-0068519_3	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0068519_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0068519_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0068519_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0068519_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0068519_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0068519_4	UniRef90	UniRef90_A0A416N3J2	Phage portal protein	NA
UHGV-0068519_4	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0068519_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0068519_4	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0068519_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0068519_5	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0068519_5	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0068519_5	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0068519_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0068519_5	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0068519_5	COG	COG2369	NA	NA
UHGV-0068519_5	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0068519_7	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0068519_7	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0068519_7	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0068519_8	Structural annotation	PF01281	NA	NA
UHGV-0068519_9	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0068519_9	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-0068519_9	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0068519_9	Pfam	PF14265	NA	DUF4355
UHGV-0068519_9	Structural annotation	PF14265	NA	NA
UHGV-0068519_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0068519_10	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0068519_10	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0068519_10	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0068519_11	PHROG	phrog_2724	NA	unknown function
UHGV-0068519_11	UniRef90	UniRef90_A0A1C5LBF0	Rho termination factor, N-terminal domain	NA
UHGV-0068519_11	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0068519_11	COG	COG0292	Ribosomal protein L20	NA
UHGV-0068519_11	Structural annotation	PF07498	NA	NA
UHGV-0068519_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0068519_12	UniRef90	UniRef90_A0A1C5LAU6	Phage gp6-like head-tail connector protein	NA
UHGV-0068519_12	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0068519_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0068519_12	Structural annotation	PF05135	NA	NA
UHGV-0068519_13	PHROG	phrog_2168	NA	unknown function
UHGV-0068519_13	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0068519_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0068519_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0068519_14	UniRef90	UniRef90_A0A1C5LAB9	Phage protein, HK97 gp10 family	NA
UHGV-0068519_14	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0068519_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0068519_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0068519_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0068519_15	PHROG	phrog_78	tail terminator	connector
UHGV-0068519_15	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0068519_15	Structural annotation	PF05657	NA	NA
UHGV-0068519_16	PHROG	phrog_158	major tail protein	tail
UHGV-0068519_16	UniRef90	UniRef90_A0A1M7JWZ7	Phage tail tube protein, TTP	NA
UHGV-0068519_16	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0068519_16	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0068519_17	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0068519_17	UniRef90	UniRef90_UPI001D069341	NA	NA
UHGV-0068519_17	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0068519_17	Structural annotation	PF19591	NA	NA
UHGV-0068519_18	PHROG	phrog_2066	NA	unknown function
UHGV-0068519_18	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0068519_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0068519_19	UniRef90	UniRef90_A0A1C5L9Y5	Phage-related protein	NA
UHGV-0068519_19	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0068519_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0068519_20	PHROG	phrog_1194	NA	unknown function
UHGV-0068519_20	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0068519_20	Pfam	PF20458	NA	DUF6711
UHGV-0068519_20	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0068519_21	PHROG	phrog_6616	tail protein	tail
UHGV-0068519_21	UniRef90	UniRef90_A0A414EG21	Tail fiber domain-containing protein	NA
UHGV-0068519_21	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0068519_21	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0068519_22	PHROG	phrog_18444	NA	unknown function
UHGV-0068519_22	eggNOG-mapper	411459.RUMOBE_00912	NA	NA
UHGV-0068519_23	eggNOG-mapper	1121866.AUGK01000003_gene1445	NA	NA
UHGV-0068519_24	PHROG	phrog_16164	NA	unknown function
UHGV-0068519_24	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0068519_24	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0068519_25	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-0068519_26	PHROG	phrog_4105	NA	unknown function
UHGV-0068519_26	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0068519_27	PHROG	phrog_18218	NA	unknown function
UHGV-0068519_27	UniRef90	UniRef90_UPI001C0EBFB3	ribonuclease	NA
UHGV-0068519_27	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-0068519_27	Structural annotation	PF06946	NA	NA
UHGV-0068519_28	KOfam	K07273	acm; lysozyme	NA
UHGV-0068519_28	PHROG	phrog_6745	endolysin	lysis
UHGV-0068519_28	UniRef90	UniRef90_A0A1C5L8B5	Lysozyme M1	NA
UHGV-0068519_28	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0068519_28	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0068519_28	Pfam	PF05257	CHAP domain	CHAP
UHGV-0068519_28	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0068519_28	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA
UHGV-0068519_29	KOfam	K09812	ftsE; cell division transport system ATP-binding protein	NA
UHGV-0068519_29	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0068519_29	UniRef90	UniRef90_A0A173X1J2	Cell division ATP-binding protein FtsE	NA
UHGV-0068519_29	eggNOG-mapper	411459.RUMOBE_03075	NA	NA
UHGV-0068519_29	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0068519_29	NCBIFam	TIGR02673.1	cell division ATP-binding protein FtsE	NA
UHGV-0068519_29	COG	COG2884	Cell division ATPase FtsE	NA
UHGV-0068519_29	Structural annotation	PF00005, MF_01005, TIGR02211, COG1136	NA	NA
UHGV-0068519_30	eggNOG-mapper	457412.RSAG_02920	Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation	NA
UHGV-0068519_30	COG	COG2177	Cell division protein FtsX	NA