UHGV-0068528

Genome information

Genome length 37,329 bps

CDS count 56

Completeness 93.18% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068528
vOTU ID	vOTU-071430
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_126328
BioSample	SAMEA2737874
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68
Jumbo phage	No

Genome content
Genome length	37,329 bps
GC content	40.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.96%
Average CDS length	608.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068528_1	KOfam	K14059	int; integrase	NA
UHGV-0068528_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0068528_1	UniRef90	UniRef90_A0A3R6QDD5	Site-specific integrase	NA
UHGV-0068528_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0068528_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0068528_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0068528_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0068528_3	PHROG	phrog_20886	NA	unknown function
UHGV-0068528_3	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0068528_3	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0068528_3	Structural annotation	PF06114	NA	NA
UHGV-0068528_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0068528_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0068528_4	UniRef90	UniRef90_A0A416ZY02	XRE family transcriptional regulator	NA
UHGV-0068528_4	eggNOG-mapper	626523.GCWU000342_01050	Helix-turn-helix	NA
UHGV-0068528_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0068528_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0068528_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0068528_5	UniRef90	UniRef90_A0A416ZXQ1	NA	NA
UHGV-0068528_5	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-0068528_5	Pfam	PF05339	NA	DUF739
UHGV-0068528_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0068528_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0068528_6	PHROG	phrog_3240	NA	unknown function
UHGV-0068528_6	UniRef90	UniRef90_Q4ZDA8	ORF074	NA
UHGV-0068528_6	eggNOG-mapper	320841.Q4ZC34_9CAUD	NA	NA
UHGV-0068528_8	PHROG	phrog_3292	NA	unknown function
UHGV-0068528_8	UniRef90	UniRef90_UPI0009954BD2	KTSC domain-containing protein	NA
UHGV-0068528_8	eggNOG-mapper	1196322.A370_02089	KTSC domain	NA
UHGV-0068528_8	Pfam	PF13619	KTSC domain	KTSC
UHGV-0068528_8	COG	COG4249	NA	NA
UHGV-0068528_8	Structural annotation	PF13619	NA	NA
UHGV-0068528_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0068528_10	UniRef90	UniRef90_UPI000E75BB92	YqaJ viral recombinase family protein	NA
UHGV-0068528_10	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0068528_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0068528_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0068528_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0068528_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0068528_11	PHROG	phrog_674	NA	unknown function
UHGV-0068528_11	UniRef90	UniRef90_UPI001C1259C1	NA	NA
UHGV-0068528_11	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0068528_11	Pfam	PF07083	NA	DUF1351
UHGV-0068528_11	Structural annotation	PF07083	NA	NA
UHGV-0068528_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0068528_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0068528_13	UniRef90	UniRef90_A0A844E2H7	Recombinase	NA
UHGV-0068528_13	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0068528_13	Pfam	PF03837	RecT family	RecT
UHGV-0068528_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0068528_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0068528_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0068528_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0068528_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0068528_15	UniRef90	UniRef90_R5JVR8	Single-stranded DNA-binding protein	NA
UHGV-0068528_15	eggNOG-mapper	411489.CLOL250_00507	Single-stranded DNA-binding protein	NA
UHGV-0068528_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0068528_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0068528_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0068528_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0068528_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0068528_16	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0068528_16	UniRef90	UniRef90_A0A417W6N9	Phage_rep_org_N domain-containing protein	NA
UHGV-0068528_16	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0068528_16	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0068528_16	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0068528_16	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0068528_17	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0068528_17	UniRef90	UniRef90_A0A415TAK8	NA	NA
UHGV-0068528_17	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0068528_17	Structural annotation	PF02185	NA	NA
UHGV-0068528_18	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0068528_20	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0068528_21	PHROG	phrog_9804	NA	unknown function
UHGV-0068528_21	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0068528_21	eggNOG-mapper	742740.HMPREF9474_03118	Loader and inhibitor of phage G40P	NA
UHGV-0068528_21	AcrCatalog	cluster_137185	NA	NA
UHGV-0068528_21	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0068528_21	Structural annotation	PF11417	NA	NA
UHGV-0068528_22	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0068528_22	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0068528_22	eggNOG-mapper	397290.C810_00409	NA	NA
UHGV-0068528_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0068528_23	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0068528_23	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0068528_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0068528_23	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0068528_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0068528_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0068528_24	UniRef90	UniRef90_A0A3R6PIU8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0068528_24	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0068528_24	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0068528_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0068528_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0068528_24	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0068528_25	PHROG	phrog_8684	NA	unknown function
UHGV-0068528_25	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0068528_25	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0068528_25	Pfam	PF09643	YopX protein	YopX
UHGV-0068528_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0068528_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0068528_28	PHROG	phrog_17690	NA	unknown function
UHGV-0068528_28	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0068528_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0068528_29	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0068528_29	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-0068528_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0068528_29	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0068528_30	PHROG	phrog_7024	NA	unknown function
UHGV-0068528_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0068528_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0068528_31	UniRef90	UniRef90_A0A417PRW3	Terminase small subunit	NA
UHGV-0068528_31	eggNOG-mapper	476272.RUMHYD_02844	Terminase Small Subunit	NA
UHGV-0068528_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0068528_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0068528_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0068528_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0068528_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0068528_32	UniRef90	UniRef90_A0A822LI54	Terminase_3 domain-containing protein	NA
UHGV-0068528_32	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0068528_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0068528_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0068528_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0068528_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0068528_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0068528_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0068528_35	UniRef90	UniRef90_UPI000E5D0BC3	phage portal protein	NA
UHGV-0068528_35	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0068528_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0068528_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0068528_36	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0068528_36	UniRef90	UniRef90_A0A3R6X4N0	Phage_Mu_F domain-containing protein	NA
UHGV-0068528_36	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0068528_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0068528_36	COG	COG2369	NA	NA
UHGV-0068528_37	eggNOG-mapper	877421.AUJT01000003_gene3270	NA	NA
UHGV-0068528_38	PHROG	phrog_1129	holin	lysis
UHGV-0068528_38	UniRef90	UniRef90_A0A3D5IBP7	Enolase	NA
UHGV-0068528_38	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0068528_38	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0068528_38	Structural annotation	PF06946	NA	NA
UHGV-0068528_39	PHROG	phrog_21357	endolysin	lysis
UHGV-0068528_39	UniRef90	UniRef90_UPI00156F8A64	CHAP domain-containing protein	NA
UHGV-0068528_39	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0068528_39	Pfam	PF05257	CHAP domain	CHAP
UHGV-0068528_39	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0068528_39	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0068528_39	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA
UHGV-0068528_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0068528_40	UniRef90	UniRef90_A0A1C6E8W4	Phage minor structural protein GP20	NA
UHGV-0068528_40	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0068528_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0068528_40	Structural annotation	PF06810	NA	NA
UHGV-0068528_41	PHROG	phrog_247	major head protein	head and packaging
UHGV-0068528_41	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0068528_41	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0068528_41	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0068528_41	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0068528_43	PHROG	phrog_1236	head protein	head and packaging
UHGV-0068528_43	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0068528_43	Structural annotation	PF05135	NA	NA
UHGV-0068528_44	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0068528_44	UniRef90	UniRef90_UPI001373E6F4	head-tail adaptor protein	NA
UHGV-0068528_44	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-0068528_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0068528_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0068528_45	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-0068528_45	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0068528_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0068528_45	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0068528_46	PHROG	phrog_957	head protein	head and packaging
UHGV-0068528_46	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0068528_46	Structural annotation	PF12691	NA	NA
UHGV-0068528_47	PHROG	phrog_885	major tail protein	tail
UHGV-0068528_47	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0068528_47	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0068528_48	PHROG	phrog_1021	NA	unknown function
UHGV-0068528_48	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0068528_49	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0068528_50	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0068528_50	UniRef90	UniRef90_UPI000995A6F2	phage tail tape measure protein	NA
UHGV-0068528_50	eggNOG-mapper	1201292.DR75_1631	Phage-related minor tail protein	NA
UHGV-0068528_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0068528_50	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0068528_50	COG	COG5283	Phage-related tail protein	NA
UHGV-0068528_50	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0068528_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0068528_51	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0068528_51	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0068528_51	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0068528_52	PHROG	phrog_538	minor tail protein	tail
UHGV-0068528_52	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0068528_52	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0068528_52	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0068528_52	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0068528_53	PHROG	phrog_9994	NA	unknown function
UHGV-0068528_53	UniRef90	UniRef90_A0A173RZM4	Phage-related holin (Lysis protein)	NA
UHGV-0068528_53	eggNOG-mapper	411468.CLOSCI_00275	NA	NA
UHGV-0068528_53	Structural annotation	PF18573, PF20747, NF033147	NA	NA
UHGV-0068528_54	PHROG	phrog_1863	NA	unknown function
UHGV-0068528_54	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0068528_55	eggNOG-mapper	411489.CLOL250_00122	NA	NA
UHGV-0068528_56	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0068528_56	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0068528_56	UniRef90	UniRef90_R5JWW4	RNA polymerase sigma factor	NA
UHGV-0068528_56	eggNOG-mapper	411489.CLOL250_00123	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0068528_56	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0068528_56	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0068528_56	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0068528_56	NCBIFam	NF006158.0	RNA polymerase sporulation sigma factor SigE	NA
UHGV-0068528_56	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0068528_56	Structural annotation	PF04542, MF_00961, NF006158, COG1191	NA	NA