UHGV-0068538

Genome information

vOTU vOTU-020735

Genome length 26,341 bps

CDS count 35

Completeness 64.93% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068538
vOTU ID	vOTU-020735
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_109872
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.39
Jumbo phage	No

Genome content
Genome length	26,341 bps
GC content	41.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	93.35%
Average CDS length	709.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068538_1	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0068538_1	UniRef90	UniRef90_A0A2S7ZHM1	VRR-NUC domain-containing protein	NA
UHGV-0068538_1	eggNOG-mapper	546273.VEIDISOL_00705	VRR_NUC	NA
UHGV-0068538_1	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0068538_1	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0068538_2	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0068538_2	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0068538_2	UniRef90	UniRef90_A0A2S7ZHG7	DEAD/DEAH box helicase	NA
UHGV-0068538_2	eggNOG-mapper	546273.VEIDISOL_00706	SNF2 family	NA
UHGV-0068538_2	PADLOC	DpdE_00011	DpdE	DPD
UHGV-0068538_2	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0068538_2	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0068538_2	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0068538_2	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0068538_3	PHROG	phrog_236	nucleotide kinase	other
UHGV-0068538_3	UniRef90	UniRef90_UPI001D0A2658	NA	NA
UHGV-0068538_3	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0068538_3	Pfam	PF11753	NA	DUF3310
UHGV-0068538_3	Structural annotation	PF11753	NA	NA
UHGV-0068538_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0068538_4	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0068538_4	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0068538_4	Pfam	PF07374	NA	DUF1492
UHGV-0068538_4	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0068538_5	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0068538_5	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0068538_5	UniRef90	UniRef90_C4FP85	Terminase small subunit	NA
UHGV-0068538_5	eggNOG-mapper	546273.VEIDISOL_00709	terminase, small subunit	NA
UHGV-0068538_5	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0068538_5	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0068538_5	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0068538_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0068538_6	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0068538_6	UniRef90	UniRef90_C4FP86	Phage terminase, large subunit, PBSX family	NA
UHGV-0068538_6	eggNOG-mapper	546273.VEIDISOL_00710	Phage terminase, large subunit	NA
UHGV-0068538_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0068538_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0068538_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0068538_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0068538_6	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0068538_7	PHROG	phrog_64	portal protein	head and packaging
UHGV-0068538_7	UniRef90	UniRef90_C4FP87	Phage portal protein, SPP1 Gp6-like protein	NA
UHGV-0068538_7	eggNOG-mapper	546273.VEIDISOL_00711	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0068538_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0068538_7	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0068538_8	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0068538_8	UniRef90	UniRef90_C4FP88	Phage protein F-like protein	NA
UHGV-0068538_8	eggNOG-mapper	546273.VEIDISOL_00712	Phage Mu protein F like protein	NA
UHGV-0068538_8	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0068538_8	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0068538_8	COG	COG2369	NA	NA
UHGV-0068538_8	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0068538_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0068538_9	UniRef90	UniRef90_UPI000F8DD753	phage scaffolding protein	NA
UHGV-0068538_9	eggNOG-mapper	546273.VEIDISOL_00713	Phage minor structural protein GP20	NA
UHGV-0068538_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0068538_9	Structural annotation	PF06810	NA	NA
UHGV-0068538_10	PHROG	phrog_544	major head protein	head and packaging
UHGV-0068538_10	UniRef90	UniRef90_A0A496PA36	N4-gp56 family major capsid protein	NA
UHGV-0068538_10	eggNOG-mapper	546273.VEIDISOL_00714	NA	NA
UHGV-0068538_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0068538_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0068538_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0068538_11	eggNOG-mapper	1111454.HMPREF1250_0173	NA	NA
UHGV-0068538_11	Structural annotation	PF05135	NA	NA
UHGV-0068538_12	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0068538_12	eggNOG-mapper	546273.VEIDISOL_01060	NA	NA
UHGV-0068538_12	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0068538_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0068538_13	UniRef90	UniRef90_A0A496P818	HK97 gp10 family phage protein	NA
UHGV-0068538_13	eggNOG-mapper	546273.VEIDISOL_01061	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0068538_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0068538_13	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0068538_14	PHROG	phrog_525	NA	unknown function
UHGV-0068538_14	UniRef90	UniRef90_A0A841R2B4	Ribosomal protein L39E	NA
UHGV-0068538_14	eggNOG-mapper	546273.VEIDISOL_01062	NA	NA
UHGV-0068538_14	Pfam	PF20765	NA	DUF6838
UHGV-0068538_14	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0068538_15	PHROG	phrog_966	NA	unknown function
UHGV-0068538_16	PHROG	phrog_279	tail sheath	tail
UHGV-0068538_16	UniRef90	UniRef90_A0A496P993	Phage tail protein	NA
UHGV-0068538_16	eggNOG-mapper	546273.VEIDISOL_00720	Phage tail sheath C-terminal domain	NA
UHGV-0068538_16	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0068538_16	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0068538_16	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0068538_16	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0068538_17	PHROG	phrog_365	tail protein	tail
UHGV-0068538_17	UniRef90	UniRef90_C4FP97	Putative core tail protein	NA
UHGV-0068538_17	eggNOG-mapper	546273.VEIDISOL_00721	Phage tail tube protein	NA
UHGV-0068538_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0068538_17	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0068538_18	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0068538_18	UniRef90	UniRef90_C4FP98	Phage XkdN-like protein	NA
UHGV-0068538_18	eggNOG-mapper	546273.VEIDISOL_00722	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0068538_18	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0068538_18	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0068538_19	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0068538_19	UniRef90	UniRef90_A0A2S7ZHD8	TMP_3 domain-containing protein	NA
UHGV-0068538_19	eggNOG-mapper	546273.VEIDISOL_00724	tape measure	NA
UHGV-0068538_19	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0068538_19	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0068538_19	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0068538_19	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0068538_20	PHROG	phrog_380	endolysin	lysis
UHGV-0068538_20	UniRef90	UniRef90_C4FPA1	LysM domain-containing protein	NA
UHGV-0068538_20	eggNOG-mapper	546273.VEIDISOL_00725	PFAM LysM domain	NA
UHGV-0068538_20	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0068538_20	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0068538_21	PHROG	phrog_400	tail protein	tail
UHGV-0068538_21	UniRef90	UniRef90_U7UPQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0068538_21	eggNOG-mapper	546273.VEIDISOL_00726	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0068538_21	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0068538_21	Structural annotation	PF14594, PF05382, NF033848, COG4379	NA	NA
UHGV-0068538_22	PHROG	phrog_579	NA	unknown function
UHGV-0068538_22	UniRef90	UniRef90_UPI0019614343	NA	NA
UHGV-0068538_22	eggNOG-mapper	546273.VEIDISOL_00727	NA	NA
UHGV-0068538_22	Pfam	PF10844	NA	DUF2577
UHGV-0068538_22	Structural annotation	PF10844	NA	NA
UHGV-0068538_23	PHROG	phrog_120	baseplate protein	tail
UHGV-0068538_23	UniRef90	UniRef90_UPI001960E59F	NA	NA
UHGV-0068538_23	eggNOG-mapper	546273.VEIDISOL_00728	NA	NA
UHGV-0068538_23	Pfam	PF10934	NA	DUF2634
UHGV-0068538_23	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0068538_23	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0068538_24	PHROG	phrog_6	baseplate protein	tail
UHGV-0068538_24	UniRef90	UniRef90_A0A2S7ZHL0	Baseplate_J domain-containing protein	NA
UHGV-0068538_24	eggNOG-mapper	546273.VEIDISOL_00729	Baseplate J-like protein	NA
UHGV-0068538_24	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0068538_24	COG	COG3299	NA	NA
UHGV-0068538_24	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0068538_25	PHROG	phrog_521	tail protein	tail
UHGV-0068538_25	UniRef90	UniRef90_UPI000F8F5AA4	NA	NA
UHGV-0068538_25	eggNOG-mapper	546273.VEIDISOL_00730	NA	NA
UHGV-0068538_25	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0068538_25	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0068538_25	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0068538_26	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0068538_26	UniRef90	UniRef90_UPI001D0A4391	phage tail protein	NA
UHGV-0068538_26	eggNOG-mapper	546273.VEIDISOL_00731	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0068538_26	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0068538_26	Structural annotation	PF12571	NA	NA
UHGV-0068538_27	KOfam	K14059	int; integrase	NA
UHGV-0068538_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0068538_27	UniRef90	UniRef90_UPI00189C24A4	site-specific integrase	NA
UHGV-0068538_27	eggNOG-mapper	546273.VEIDISOL_00732	Belongs to the 'phage' integrase family	NA
UHGV-0068538_27	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0068538_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0068538_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0068538_27	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0068538_28	PHROG	phrog_32639	NA	unknown function
UHGV-0068538_28	Structural annotation	PF21611	NA	NA
UHGV-0068538_30	Structural annotation	PF21146, NF041425, COG5513	NA	NA
UHGV-0068538_31	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0068538_31	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0068538_31	UniRef90	UniRef90_C4FPB2	Collagen triple helix repeat protein	NA
UHGV-0068538_31	eggNOG-mapper	546273.VEIDISOL_00736	cell adhesion	NA
UHGV-0068538_31	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0068538_31	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0068538_32	eggNOG-mapper	546273.VEIDISOL_00737	NA	NA
UHGV-0068538_33	PHROG	phrog_27828	NA	unknown function
UHGV-0068538_33	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0068538_33	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0068538_34	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0068538_34	PHROG	phrog_435	endolysin	lysis
UHGV-0068538_34	UniRef90	UniRef90_W1WXV6	MurNAc-LAA domain-containing protein	NA
UHGV-0068538_34	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0068538_34	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0068538_34	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0068538_34	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0068538_35	PHROG	phrog_18860	NA	unknown function