UHGV-0068608

Genome information

Genome length 33,459 bps

CDS count 55

Completeness 85.01% (medium-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068608
vOTU ID	vOTU-022821
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137439
BioSample	SAMEA2737774
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.78
Jumbo phage	No

Genome content
Genome length	33,459 bps
GC content	44.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.06%
Average CDS length	575.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068608_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0068608_1	UniRef90	UniRef90_R7MSP0	Conserved domain protein	NA
UHGV-0068608_1	eggNOG-mapper	1487921.DP68_09000	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0068608_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0068608_1	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0068608_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0068608_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0068608_2	UniRef90	UniRef90_A0A1C6CIL1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0068608_2	eggNOG-mapper	1160721.RBI_II00519	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0068608_2	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0068608_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0068608_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-0068608_2	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0068608_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0068608_3	PHROG	phrog_894	endolysin	lysis
UHGV-0068608_3	UniRef90	UniRef90_R7GQH8	Peptidase M15	NA
UHGV-0068608_3	eggNOG-mapper	641112.ACOK01000068_gene2796	hydrolase, family 25	NA
UHGV-0068608_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0068608_3	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0068608_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0068608_3	COG	COG3108	NA	NA
UHGV-0068608_3	Structural annotation	PF05951, PF01471, COG3108, COG3409	NA	NA
UHGV-0068608_4	PHROG	phrog_13256	NA	unknown function
UHGV-0068608_4	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0068608_8	PHROG	phrog_3558	tail protein	tail
UHGV-0068608_8	UniRef90	UniRef90_A0A315Y2Y8	Phage minor structural protein	NA
UHGV-0068608_8	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-0068608_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0068608_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0068608_8	COG	COG4926	Phage-related protein	NA
UHGV-0068608_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0068608_9	UniRef90	UniRef90_K8E752	Lj928 prophage protein	NA
UHGV-0068608_9	eggNOG-mapper	641112.ACOK01000073_gene2905	NA	NA
UHGV-0068608_9	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0068608_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0068608_10	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0068608_10	eggNOG-mapper	478749.BRYFOR_07547	Phage tail tape measure protein, TP901 family	NA
UHGV-0068608_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0068608_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0068608_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0068608_10	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0068608_11	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0068608_12	PHROG	phrog_706	NA	unknown function
UHGV-0068608_12	UniRef90	UniRef90_A0A315Y4B3	Bacteriophage Gp15 protein	NA
UHGV-0068608_12	eggNOG-mapper	641112.ACOK01000073_gene2903	Bacteriophage Gp15 protein	NA
UHGV-0068608_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0068608_12	Structural annotation	PF06854	NA	NA
UHGV-0068608_13	PHROG	phrog_4450	NA	unknown function
UHGV-0068608_13	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0068608_13	Pfam	PF20378	NA	DUF6673
UHGV-0068608_13	Structural annotation	PF20378	NA	NA
UHGV-0068608_14	PHROG	phrog_3099	NA	unknown function
UHGV-0068608_14	eggNOG-mapper	641112.ACOK01000073_gene2900	NA	NA
UHGV-0068608_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0068608_15	PHROG	phrog_3266	tail completion	connector
UHGV-0068608_15	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0068608_15	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0068608_15	Structural annotation	PF12691	NA	NA
UHGV-0068608_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0068608_16	UniRef90	UniRef90_A0A3C0QTS8	Capsid protein	NA
UHGV-0068608_16	eggNOG-mapper	641112.ACOK01000073_gene2898	Minor capsid protein	NA
UHGV-0068608_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0068608_16	Structural annotation	PF11114	NA	NA
UHGV-0068608_17	eggNOG-mapper	641112.ACOK01000073_gene2897	NA	NA
UHGV-0068608_17	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0068608_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0068608_18	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-0068608_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-0068608_19	UniRef90	UniRef90_D4LDZ8	p22 coat protein-gene protein 5	NA
UHGV-0068608_19	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0068608_19	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0068608_19	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0068608_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0068608_20	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0068608_20	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-0068608_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0068608_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0068608_23	UniRef90	UniRef90_A0A315Y2B8	Minor capsid protein 2	NA
UHGV-0068608_23	eggNOG-mapper	641112.ACOK01000073_gene2890	NA	NA
UHGV-0068608_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0068608_23	COG	COG2369	NA	NA
UHGV-0068608_23	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0068608_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0068608_24	UniRef90	UniRef90_A0A417EXF7	Phage capsid protein	NA
UHGV-0068608_24	eggNOG-mapper	641112.ACOK01000073_gene2889	NA	NA
UHGV-0068608_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0068608_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0068608_25	PHROG	phrog_10250	NA	unknown function
UHGV-0068608_25	UniRef90	UniRef90_D4LE03	Phage terminase, large subunit, PBSX family	NA
UHGV-0068608_25	eggNOG-mapper	411473.RUMCAL_01923	Phage terminase, large subunit, PBSX family	NA
UHGV-0068608_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0068608_25	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0068608_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0068608_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0068608_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0068608_26	eggNOG-mapper	411473.RUMCAL_01921	NA	NA
UHGV-0068608_27	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0068608_27	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0068608_27	UniRef90	UniRef90_A0A3C2BAX0	NGN domain-containing protein	NA
UHGV-0068608_27	eggNOG-mapper	411473.RUMCAL_01920	Transcription termination factor nusG	NA
UHGV-0068608_27	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0068608_27	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0068608_27	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0068608_28	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0068608_28	UniRef90	UniRef90_J5WG17	PF11985 family protein	NA
UHGV-0068608_28	eggNOG-mapper	411473.RUMCAL_01919	NA	NA
UHGV-0068608_28	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0068608_28	Structural annotation	PF11985	NA	NA
UHGV-0068608_29	PHROG	phrog_25462	NA	unknown function
UHGV-0068608_29	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0068608_29	eggNOG-mapper	411473.RUMCAL_01918	NA	NA
UHGV-0068608_29	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0068608_30	PHROG	phrog_462	lipoprotein	other
UHGV-0068608_30	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0068608_31	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0068608_31	UniRef90	UniRef90_UPI000F54A4B8	DNA-binding protein	NA
UHGV-0068608_31	eggNOG-mapper	411902.CLOBOL_06317	Mor transcription activator family	NA
UHGV-0068608_31	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0068608_31	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0068608_31	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0068608_32	PHROG	phrog_286	NA	unknown function
UHGV-0068608_32	UniRef90	UniRef90_UPI000F51F9E5	regulatory protein GemA	NA
UHGV-0068608_32	eggNOG-mapper	1160721.RBI_II00550	NA	NA
UHGV-0068608_32	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0068608_32	Structural annotation	PF06252	NA	NA
UHGV-0068608_33	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0068608_33	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0068608_33	UniRef90	UniRef90_A0A1C6DXA8	DNA replication protein	NA
UHGV-0068608_33	eggNOG-mapper	411473.RUMCAL_01914	NA	NA
UHGV-0068608_33	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0068608_33	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0068608_33	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0068608_36	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0068608_36	eggNOG-mapper	1499683.CCFF01000017_gene2593	NA	NA
UHGV-0068608_37	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0068608_37	AcrCatalog	cluster_71843	NA	NA
UHGV-0068608_38	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0068608_38	UniRef90	UniRef90_A0A1C6DZ10	Transcriptional regulator, AbrB family	NA
UHGV-0068608_38	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-0068608_38	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0068608_38	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0068608_38	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0068608_38	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0068608_41	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0068608_41	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0068608_41	UniRef90	UniRef90_A0A1C6DZD6	Putative secretion ATPase, PEP-CTERM locus subfamily	NA
UHGV-0068608_41	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0068608_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0068608_41	Pfam	PF13401	AAA domain	AAA_22
UHGV-0068608_41	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0068608_41	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0068608_42	KOfam	K07497	K07497; putative transposase	NA
UHGV-0068608_42	PHROG	phrog_310	transposase	integration and excision
UHGV-0068608_42	UniRef90	UniRef90_A0A349GP78	Integrase catalytic domain-containing protein	NA
UHGV-0068608_42	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0068608_42	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0068608_42	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0068608_42	Pfam	PF00665	Integrase core domain	rve
UHGV-0068608_42	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0068608_42	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0068608_42	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0068608_43	AcrCatalog	cluster_158759	NA	NA
UHGV-0068608_44	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0068608_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0068608_51	UniRef90	UniRef90_C9LU52	DNA-binding helix-turn-helix protein	NA
UHGV-0068608_51	eggNOG-mapper	546271.Selsp_1361	Transcriptional	NA
UHGV-0068608_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0068608_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0068608_51	Structural annotation	PF12844, NF007257, COG1396	NA	NA
UHGV-0068608_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0068608_52	UniRef90	UniRef90_B0P6Y9	BRO family, N-terminal domain protein	NA
UHGV-0068608_52	eggNOG-mapper	445972.ANACOL_00517	BRO family, N-terminal domain	NA
UHGV-0068608_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0068608_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0068608_52	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0068608_55	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0068608_55	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0068608_55	UniRef90	UniRef90_UPI000F54BB0A	helix-turn-helix domain-containing protein	NA
UHGV-0068608_55	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0068608_55	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0068608_55	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0068608_55	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA