UHGV-0068666

Genome information

Genome length 74,726 bps

CDS count 102

Completeness 99.90% (high-quality)

geNomad score 0.9695

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068666
vOTU ID	vOTU-069492
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_123033
BioSample	SAMEA2579911
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9695
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.1
Jumbo phage	No

Genome content
Genome length	74,726 bps
GC content	39.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	102
CDS density	88.55%
Average CDS length	653.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068666_1	eggNOG-mapper	1121100.JCM6294_554	NA	NA
UHGV-0068666_3	UniRef90	UniRef90_UPI00164BF06B	helix-turn-helix transcriptional regulator	NA
UHGV-0068666_3	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0068666_8	AcrCatalog	cluster_20852	NA	NA
UHGV-0068666_9	UniRef90	UniRef90_UPI00046FCD5F	helix-turn-helix domain-containing protein	NA
UHGV-0068666_9	eggNOG-mapper	742727.HMPREF9447_04898	Helix-turn-helix domain	NA
UHGV-0068666_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0068666_9	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0068666_10	PHROG	phrog_30054	NA	unknown function
UHGV-0068666_10	eggNOG-mapper	435590.BVU_2870	NA	NA
UHGV-0068666_11	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0068666_11	PHROG	phrog_3193	NA	unknown function
UHGV-0068666_11	UniRef90	UniRef90_A0A891TRH4	ASCH domain-containing protein	NA
UHGV-0068666_11	eggNOG-mapper	1268240.ATFI01000008_gene2564	ASCH domain	NA
UHGV-0068666_11	Pfam	PF04266	ASCH domain	ASCH
UHGV-0068666_11	Structural annotation	COG4933	NA	NA
UHGV-0068666_12	Structural annotation	PF18350, MF_01354, TIGR00739, COG1862	NA	NA
UHGV-0068666_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0068666_14	UniRef90	UniRef90_UPI0004B1C667	ERF family protein	NA
UHGV-0068666_14	eggNOG-mapper	1536774.H70357_24790	ERF superfamily	NA
UHGV-0068666_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0068666_14	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0068666_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0068666_16	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0068666_16	UniRef90	UniRef90_UPI001B8C08D0	NA	NA
UHGV-0068666_16	eggNOG-mapper	762968.HMPREF9441_02241	NA	NA
UHGV-0068666_16	Pfam	PF11325	NA	DUF3127
UHGV-0068666_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0068666_16	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-0068666_17	eggNOG-mapper	1122991.BAIZ01000025_gene1850	NA	NA
UHGV-0068666_19	PHROG	phrog_35807	NA	unknown function
UHGV-0068666_19	UniRef90	UniRef90_A0A173Z9Q2	DNA-directed RNA polymerase subunit beta	NA
UHGV-0068666_19	eggNOG-mapper	357276.EL88_11505	RNA polymerase activity	NA
UHGV-0068666_19	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-0068666_19	Structural annotation	PF14902	NA	NA
UHGV-0068666_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0068666_21	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0068666_21	UniRef90	UniRef90_A0A016I409	Endodeoxyribonuclease RusA family protein	NA
UHGV-0068666_21	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-0068666_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0068666_21	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0068666_24	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0068666_24	UniRef90	UniRef90_A0A174JNZ9	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	NA
UHGV-0068666_24	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-0068666_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0068666_25	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0068666_25	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0068666_25	UniRef90	UniRef90_A0A6N2XK80	DNA helicase	NA
UHGV-0068666_25	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0068666_25	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0068666_25	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0068666_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-0068666_25	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0068666_26	eggNOG-mapper	1268240.ATFI01000008_gene2560	NA	NA
UHGV-0068666_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0068666_27	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0068666_27	UniRef90	UniRef90_UPI0018AA39EB	DNA cytosine methyltransferase	NA
UHGV-0068666_27	eggNOG-mapper	1347393.HG726022_gene3592	C-5 cytosine-specific DNA methylase	NA
UHGV-0068666_27	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0068666_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0068666_27	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0068666_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0068666_27	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0068666_30	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0068666_30	UniRef90	UniRef90_A0A642PVG5	NA	NA
UHGV-0068666_30	eggNOG-mapper	1449049.JONW01000006_gene3249	NA	NA
UHGV-0068666_30	Pfam	PF12961	NA	DUF3850
UHGV-0068666_30	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0068666_32	UniRef90	UniRef90_A0A642PUS0	NA	NA
UHGV-0068666_32	Pfam	PF04448	NA	DUF551
UHGV-0068666_32	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0068666_33	eggNOG-mapper	78398.KS43_20375	NA	NA
UHGV-0068666_41	UniRef90	UniRef90_UPI001F0DC303	NA	NA
UHGV-0068666_41	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0068666_42	PHROG	phrog_874	NA	unknown function
UHGV-0068666_42	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0068666_42	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0068666_46	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0068666_46	UniRef90	UniRef90_A0A412YGH6	Adenine methyltransferase	NA
UHGV-0068666_46	eggNOG-mapper	908612.HMPREF9720_1693	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0068666_46	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0068666_46	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0068666_50	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0068666_50	UniRef90	UniRef90_A0A174KQC9	NA	NA
UHGV-0068666_50	eggNOG-mapper	1121098.HMPREF1534_00297	NA	NA
UHGV-0068666_50	Pfam	PF10097	NA	DUF2335
UHGV-0068666_50	COG	COG5346	NA	NA
UHGV-0068666_50	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0068666_55	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0068666_57	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0068666_58	eggNOG-mapper	1347393.HG726021_gene280	NA	NA
UHGV-0068666_59	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0068666_59	PHROG	phrog_315	endolysin	lysis
UHGV-0068666_59	UniRef90	UniRef90_UPI0018AA2ADF	peptidoglycan domain protein	NA
UHGV-0068666_59	eggNOG-mapper	357276.EL88_11190	Glycosyl hydrolase 108	NA
UHGV-0068666_59	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0068666_59	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0068666_59	COG	COG3926	Lysozyme family protein	NA
UHGV-0068666_59	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0068666_60	UniRef90	UniRef90_A0A1Q1PVR1	Hydrolase	NA
UHGV-0068666_66	PHROG	phrog_19846	NA	unknown function
UHGV-0068666_66	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-0068666_66	Pfam	PF21446	Long-tail fiber proximal subunit, C-terminal domain	Gp34_C
UHGV-0068666_66	COG	COG4926	Phage-related protein	NA
UHGV-0068666_67	eggNOG-mapper	742727.HMPREF9447_04845	NA	NA
UHGV-0068666_67	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0068666_69	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0068666_69	UniRef90	UniRef90_UPI0004944DBC	phage antirepressor KilAC domain-containing protein	NA
UHGV-0068666_69	eggNOG-mapper	679190.HMPREF0650_0366	KilA-N domain	NA
UHGV-0068666_69	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0068666_69	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0068666_69	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0068666_69	Structural annotation	PF03374, PF04383, COG3645, COG3943	NA	NA
UHGV-0068666_70	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0068666_70	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0068666_70	UniRef90	UniRef90_UPI0018AB6665	antA/AntB antirepressor family protein	NA
UHGV-0068666_70	eggNOG-mapper	1347393.HG726021_gene281	AntA/AntB antirepressor	NA
UHGV-0068666_70	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0068666_70	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0068666_70	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0068666_71	UniRef90	UniRef90_F0H6F3	Conserved domain protein	NA
UHGV-0068666_71	eggNOG-mapper	537011.PREVCOP_03712	NA	NA
UHGV-0068666_71	Structural annotation	PF13291	NA	NA
UHGV-0068666_72	PHROG	phrog_2546	NA	unknown function
UHGV-0068666_72	UniRef90	UniRef90_U6RLV5	RanBP2-type domain-containing protein	NA
UHGV-0068666_74	PHROG	phrog_10156	NA	unknown function
UHGV-0068666_74	eggNOG-mapper	742727.HMPREF9447_04840	NA	NA
UHGV-0068666_75	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0068666_75	UniRef90	UniRef90_UPI0012DED46F	tape measure protein	NA
UHGV-0068666_75	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-0068666_75	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0068666_75	COG	COG1511	NA	NA
UHGV-0068666_77	eggNOG-mapper	1121100.JCM6294_573	NA	NA
UHGV-0068666_77	Structural annotation	PF06894	NA	NA
UHGV-0068666_78	eggNOG-mapper	1121100.JCM6294_574	NA	NA
UHGV-0068666_78	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0068666_79	eggNOG-mapper	1121100.JCM6294_575	NA	NA
UHGV-0068666_79	Structural annotation	PF06141	NA	NA
UHGV-0068666_81	eggNOG-mapper	1121100.JCM6294_577	NA	NA
UHGV-0068666_81	Structural annotation	PF19586	NA	NA
UHGV-0068666_82	UniRef90	UniRef90_A0A2V3PKY2	Flg_new_2 domain-containing protein	NA
UHGV-0068666_82	eggNOG-mapper	1121100.JCM6294_578	NA	NA
UHGV-0068666_82	Structural annotation	PF20449	NA	NA
UHGV-0068666_83	PHROG	phrog_29	major head protein	head and packaging
UHGV-0068666_83	UniRef90	UniRef90_UPI00049418F8	major capsid protein	NA
UHGV-0068666_83	eggNOG-mapper	742727.HMPREF9447_04831	NA	NA
UHGV-0068666_83	Structural annotation	PF03864, MF_04133, NF041162, COG1659	NA	NA
UHGV-0068666_84	eggNOG-mapper	1121100.JCM6294_580	NA	NA
UHGV-0068666_85	eggNOG-mapper	742727.HMPREF9447_04829	NA	NA
UHGV-0068666_86	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0068666_86	UniRef90	UniRef90_UPI000494489F	terminase family protein	NA
UHGV-0068666_86	eggNOG-mapper	742727.HMPREF9447_04827	Terminase-like family	NA
UHGV-0068666_86	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0068666_86	COG	COG5362	Phage terminase large subunit	NA
UHGV-0068666_86	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0068666_87	PHROG	phrog_64	portal protein	head and packaging
UHGV-0068666_87	UniRef90	UniRef90_UPI000493C5C9	phage portal protein	NA
UHGV-0068666_87	eggNOG-mapper	457424.BFAG_02417	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0068666_87	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0068666_87	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0068666_88	UniRef90	UniRef90_A0A7Z6S2F9	LPD3 domain-containing protein	NA
UHGV-0068666_88	eggNOG-mapper	742727.HMPREF9447_04824	NA	NA
UHGV-0068666_88	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0068666_89	eggNOG-mapper	1121100.JCM6294_595	NA	NA
UHGV-0068666_90	PHROG	phrog_1365	NA	unknown function
UHGV-0068666_90	eggNOG-mapper	1610834.A0A0C5Q3U6_9CAUD	NA	NA
UHGV-0068666_95	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0068666_95	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0068666_95	UniRef90	UniRef90_UPI0004948236	phage/plasmid primase, P4 family	NA
UHGV-0068666_95	eggNOG-mapper	1236504.HMPREF2132_11050	Phage plasmid primase, P4 family domain protein	NA
UHGV-0068666_95	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0068666_95	Pfam	PF19263	NA	DUF5906
UHGV-0068666_95	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0068666_95	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0068666_95	Structural annotation	PF04735, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0068666_99	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0068666_99	PHROG	phrog_1	integrase	integration and excision
UHGV-0068666_99	UniRef90	UniRef90_UPI000494BDC8	tyrosine-type recombinase/integrase	NA
UHGV-0068666_99	eggNOG-mapper	742727.HMPREF9447_04803	Phage integrase family	NA
UHGV-0068666_99	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0068666_99	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0068666_99	Structural annotation	PF00589, MF_02055, NF001399, COG4974	NA	NA
UHGV-0068666_100	PHROG	phrog_33862	NA	unknown function
UHGV-0068666_101	UniRef90	UniRef90_UPI0013D41CEA	helix-turn-helix domain-containing protein	NA
UHGV-0068666_101	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0068666_102	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0068666_102	PHROG	phrog_1	integrase	integration and excision
UHGV-0068666_102	UniRef90	UniRef90_A0A3E4R446	Site-specific integrase	NA
UHGV-0068666_102	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0068666_102	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0068666_102	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0068666_102	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0068666_102	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0068666_102	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA