UHGV-0068712

Genome information

Genome length 20,602 bps

CDS count 22

Completeness 50.68% (medium-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068712
vOTU ID	vOTU-031860
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_107842
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.79
Jumbo phage	No

Genome content
Genome length	20,602 bps
GC content	30.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	93.37%
Average CDS length	876.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068712_1	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0068712_1	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0068712_1	UniRef90	UniRef90_UPI00110724D9	Clp protease ClpP	NA
UHGV-0068712_1	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0068712_1	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0068712_1	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0068712_2	PHROG	phrog_10	major head protein	head and packaging
UHGV-0068712_2	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-0068712_2	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0068712_2	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0068712_2	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0068712_2	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0068712_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0068712_3	PHROG	phrog_749	NA	unknown function
UHGV-0068712_3	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0068712_3	eggNOG-mapper	1121866.AUGK01000006_gene881	NA	NA
UHGV-0068712_4	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0068712_4	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0068712_4	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0068712_4	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0068712_4	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0068712_5	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0068712_6	PHROG	phrog_5509	neck protein	connector
UHGV-0068712_6	eggNOG-mapper	1123315.AUIP01000014_gene1956	NA	NA
UHGV-0068712_6	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0068712_7	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0068712_7	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0068712_7	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0068712_8	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-0068712_9	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0068712_9	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0068712_9	UniRef90	UniRef90_UPI0011074901	phage tail tape measure protein	NA
UHGV-0068712_9	eggNOG-mapper	1536774.H70357_10670	minor tail protein	NA
UHGV-0068712_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0068712_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0068712_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0068712_10	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0068712_10	UniRef90	UniRef90_UPI0003F525D5	NA	NA
UHGV-0068712_10	eggNOG-mapper	1129192.A0A0E3D988_9CAUD	regulation of transcription, DNA-dependent	NA
UHGV-0068712_10	Structural annotation	PF04480, PF05265, PF14311, TIGR00632, COG3727	NA	NA
UHGV-0068712_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0068712_12	UniRef90	UniRef90_A0A1C5VG03	Phage-related protein	NA
UHGV-0068712_12	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-0068712_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0068712_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0068712_13	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0068712_13	PHROG	phrog_7043	tail protein	tail
UHGV-0068712_13	UniRef90	UniRef90_UPI0018AA7BAA	SH3 domain-containing protein	NA
UHGV-0068712_13	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0068712_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0068712_13	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0068712_13	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0068712_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0068712_13	COG	COG4926	Phage-related protein	NA
UHGV-0068712_13	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-0068712_14	PHROG	phrog_16573	NA	unknown function
UHGV-0068712_14	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-0068712_14	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0068712_15	eggNOG-mapper	1444310.JANV01000096_gene3278	NA	NA
UHGV-0068712_17	UniRef90	UniRef90_A0A542AKB6	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-0068712_17	eggNOG-mapper	1105031.HMPREF1141_0490	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0068712_17	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0068712_17	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0068712_18	PHROG	phrog_1863	NA	unknown function
UHGV-0068712_18	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0068712_18	eggNOG-mapper	1232449.BAHV02000017_gene1511	NA	NA
UHGV-0068712_19	PHROG	phrog_1129	holin	lysis
UHGV-0068712_19	UniRef90	UniRef90_A0A0B3VH17	Holin	NA
UHGV-0068712_19	eggNOG-mapper	702450.CUW_2556	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0068712_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0068712_19	Structural annotation	PF06946	NA	NA
UHGV-0068712_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0068712_20	PHROG	phrog_435	endolysin	lysis
UHGV-0068712_20	UniRef90	UniRef90_UPI0018A97EC2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0068712_20	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-0068712_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0068712_20	Pfam	PF19087	NA	DUF5776
UHGV-0068712_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0068712_20	Structural annotation	PF01520, PF19087, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0068712_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0068712_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0068712_21	UniRef90	UniRef90_W1UDF0	Tyrosine recombinase XerC (Fragment)	NA
UHGV-0068712_21	eggNOG-mapper	632245.CLP_2596	Belongs to the 'phage' integrase family	NA
UHGV-0068712_21	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0068712_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0068712_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0068712_21	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0068712_22	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0068712_22	UniRef90	UniRef90_A0A2K4ZQ95	HTH cro/C1-type domain-containing protein	NA
UHGV-0068712_22	eggNOG-mapper	1449050.JNLE01000005_gene5267	Filamentation induced by cAMP protein fic	NA
UHGV-0068712_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0068712_22	COG	COG3177	Fic family protein	NA
UHGV-0068712_22	Structural annotation	PF13443, NF000090, COG3655	NA	NA