UHGV-0068909

Genome information

Genome length 39,871 bps

CDS count 61

Completeness 97.83% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068909
vOTU ID	vOTU-007938
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_131782
BioSample	SAMEA2737801
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.16
Jumbo phage	No

Genome content
Genome length	39,871 bps
GC content	44.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.42%
Average CDS length	605.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068909_1	KOfam	K11631	bceA, vraD; bacitracin transport system ATP-binding protein	NA
UHGV-0068909_1	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0068909_1	UniRef90	UniRef90_A0A174Z696	Lipoprotein-releasing system ATP-binding protein LolD	NA
UHGV-0068909_1	eggNOG-mapper	1256908.HMPREF0373_00068	NA	NA
UHGV-0068909_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0068909_1	COG	COG1136	ABC-type lipoprotein export system, ATPase component	NA
UHGV-0068909_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0068909_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0068909_2	UniRef90	UniRef90_A0A3R6WU62	Site-specific recombinase	NA
UHGV-0068909_2	eggNOG-mapper	411470.RUMGNA_00187	Resolvase, N terminal domain	NA
UHGV-0068909_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0068909_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0068909_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0068909_2	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0068909_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0068909_3	UniRef90	UniRef90_A0A3R6UM93	XRE family transcriptional regulator	NA
UHGV-0068909_3	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0068909_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0068909_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0068909_4	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0068909_4	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0068909_4	UniRef90	UniRef90_A0A417QWR5	3'-5' exonuclease	NA
UHGV-0068909_4	eggNOG-mapper	1121864.OMO_01137	Exonuclease	NA
UHGV-0068909_4	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0068909_4	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0068909_4	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0068909_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0068909_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0068909_5	UniRef90	UniRef90_A0A417QX81	XRE family transcriptional regulator	NA
UHGV-0068909_5	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0068909_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0068909_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0068909_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0068909_11	PHROG	phrog_421	NA	unknown function
UHGV-0068909_11	UniRef90	UniRef90_A0A3R7BR33	NA	NA
UHGV-0068909_11	eggNOG-mapper	1235800.C819_00518	NA	NA
UHGV-0068909_11	Pfam	PF10979	NA	DUF2786
UHGV-0068909_12	Structural annotation	PF21662, NF038384, TIGR03090	NA	NA
UHGV-0068909_13	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0068909_13	UniRef90	UniRef90_A0A417QWW0	Adenine methyltransferase	NA
UHGV-0068909_13	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0068909_13	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0068909_13	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0068909_13	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0068909_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0068909_14	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0068909_14	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0068909_14	Structural annotation	PF21578	NA	NA
UHGV-0068909_15	KOfam	K18691	mltF; membrane-bound lytic murein transglycosylase F [EC:4.2.2.-]	NA
UHGV-0068909_15	PHROG	phrog_19890	NA	unknown function
UHGV-0068909_15	UniRef90	UniRef90_A0A417VH46	Lytic transglycosylase domain-containing protein	NA
UHGV-0068909_15	eggNOG-mapper	411459.RUMOBE_01755	Transglycosylase SLT domain protein	NA
UHGV-0068909_15	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0068909_15	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0068909_18	PHROG	phrog_824	NA	unknown function
UHGV-0068909_18	UniRef90	UniRef90_A0A417QX87	VRR-NUC domain-containing protein	NA
UHGV-0068909_18	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0068909_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0068909_19	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0068909_20	PHROG	phrog_10867	NA	unknown function
UHGV-0068909_20	eggNOG-mapper	411459.RUMOBE_01751	NA	NA
UHGV-0068909_21	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0068909_21	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0068909_21	UniRef90	UniRef90_A0A3R6XV13	ParA family protein	NA
UHGV-0068909_21	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0068909_21	Pfam	PF13614	AAA domain	AAA_31
UHGV-0068909_21	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0068909_21	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0068909_22	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0068909_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0068909_23	PHROG	phrog_15982	NA	unknown function
UHGV-0068909_23	UniRef90	UniRef90_A0A417VH73	ParB domain-containing protein	NA
UHGV-0068909_23	eggNOG-mapper	1232453.BAIF02000028_gene2716	ParB-like nuclease domain	NA
UHGV-0068909_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0068909_23	Pfam	PF12961	NA	DUF3850
UHGV-0068909_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0068909_23	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0068909_24	PHROG	phrog_2776	NA	unknown function
UHGV-0068909_24	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0068909_24	eggNOG-mapper	1298920.KI911353_gene2703	NA	NA
UHGV-0068909_24	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0068909_26	Structural annotation	PF14282	NA	NA
UHGV-0068909_27	PHROG	phrog_1315	NA	unknown function
UHGV-0068909_28	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0068909_28	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0068909_28	UniRef90	UniRef90_A0A417QWX3	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0068909_28	eggNOG-mapper	411470.RUMGNA_00216	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0068909_28	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0068909_28	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0068909_28	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0068909_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0068909_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0068909_30	UniRef90	UniRef90_A0A417QWS3	Single-stranded DNA-binding protein	NA
UHGV-0068909_30	eggNOG-mapper	585394.RHOM_16640	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0068909_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0068909_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0068909_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0068909_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0068909_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0068909_32	PHROG	phrog_1558	NA	unknown function
UHGV-0068909_32	UniRef90	UniRef90_UPI001EE9266C	sigma-70 region 4 domain-containing protein	NA
UHGV-0068909_32	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-0068909_32	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0068909_33	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0068909_33	UniRef90	UniRef90_A0A3R7BR43	HNH endonuclease	NA
UHGV-0068909_33	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0068909_34	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0068909_34	UniRef90	UniRef90_A0A417VG35	Phage terminase small subunit P27 family	NA
UHGV-0068909_34	eggNOG-mapper	411459.RUMOBE_01738	phage terminase, small subunit	NA
UHGV-0068909_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0068909_34	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0068909_34	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0068909_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0068909_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0068909_35	UniRef90	UniRef90_A0A417VH15	Terminase large subunit	NA
UHGV-0068909_35	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0068909_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0068909_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0068909_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0068909_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0068909_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0068909_36	UniRef90	UniRef90_A0A3R6XLQ1	Phage portal protein	NA
UHGV-0068909_36	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0068909_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0068909_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0068909_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0068909_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0068909_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0068909_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0068909_37	UniRef90	UniRef90_A0A417VFW3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0068909_37	eggNOG-mapper	411459.RUMOBE_01734	Belongs to the peptidase S14 family	NA
UHGV-0068909_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0068909_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0068909_37	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0068909_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0068909_38	UniRef90	UniRef90_A0A3R6YBY5	Phage major capsid protein	NA
UHGV-0068909_38	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0068909_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0068909_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0068909_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0068909_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0068909_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0068909_39	UniRef90	UniRef90_A0A3R6UCP2	Phage gp6-like head-tail connector protein	NA
UHGV-0068909_39	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0068909_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0068909_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0068909_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0068909_40	UniRef90	UniRef90_A0A417VGC6	Phage head-tail adapter protein	NA
UHGV-0068909_40	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0068909_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0068909_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0068909_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0068909_41	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0068909_41	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0068909_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0068909_41	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0068909_42	PHROG	phrog_78	tail terminator	connector
UHGV-0068909_42	UniRef90	UniRef90_I2E8V8	Gp10	NA
UHGV-0068909_42	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-0068909_42	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0068909_43	PHROG	phrog_88	major tail protein	tail
UHGV-0068909_43	UniRef90	UniRef90_A0A417VGN7	Major tail protein	NA
UHGV-0068909_43	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0068909_43	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0068909_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0068909_43	COG	COG5492	NA	NA
UHGV-0068909_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0068909_44	PHROG	phrog_13494	NA	unknown function
UHGV-0068909_44	eggNOG-mapper	411468.CLOSCI_01497	NA	NA
UHGV-0068909_44	Structural annotation	PF16462	NA	NA
UHGV-0068909_45	PHROG	phrog_25901	NA	unknown function
UHGV-0068909_45	eggNOG-mapper	411459.RUMOBE_01726	NA	NA
UHGV-0068909_46	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0068909_46	UniRef90	UniRef90_A0A3R6TZG0	Phage tail tape measure protein	NA
UHGV-0068909_46	eggNOG-mapper	411459.RUMOBE_01725	Phage tail tape measure protein, TP901 family	NA
UHGV-0068909_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0068909_46	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0068909_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0068909_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0068909_46	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0068909_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0068909_47	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-0068909_47	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0068909_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0068909_47	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0068909_48	PHROG	phrog_18110	NA	unknown function
UHGV-0068909_48	UniRef90	UniRef90_UPI001D08457A	phage tail protein	NA
UHGV-0068909_48	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0068909_48	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0068909_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0068909_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0068909_48	COG	COG4926	Phage-related protein	NA
UHGV-0068909_48	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0068909_49	PHROG	phrog_18444	NA	unknown function
UHGV-0068909_50	PHROG	phrog_31398	NA	unknown function
UHGV-0068909_50	UniRef90	UniRef90_A0A417VHC6	NA	NA
UHGV-0068909_50	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0068909_50	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0068909_50	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-0068909_51	PHROG	phrog_38006	NA	unknown function
UHGV-0068909_51	eggNOG-mapper	742741.HMPREF9475_00437	NA	NA
UHGV-0068909_52	PHROG	phrog_5302	tail protein	tail
UHGV-0068909_52	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-0068909_52	Structural annotation	COG1262	NA	NA
UHGV-0068909_53	PHROG	phrog_20201	NA	unknown function
UHGV-0068909_54	UniRef90	UniRef90_A0A417QX67	XkdX family protein	NA
UHGV-0068909_54	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0068909_54	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0068909_56	PHROG	phrog_1863	NA	unknown function
UHGV-0068909_56	eggNOG-mapper	742741.HMPREF9475_00442	NA	NA
UHGV-0068909_57	eggNOG-mapper	1280671.AUJH01000012_gene3135	NA	NA
UHGV-0068909_58	PHROG	phrog_36029	NA	unknown function
UHGV-0068909_60	PHROG	phrog_14030	NA	unknown function
UHGV-0068909_60	UniRef90	UniRef90_R5BP16	SH3b domain-containing protein	NA
UHGV-0068909_60	eggNOG-mapper	1095750.HMPREF9970_2291	repeat protein	NA
UHGV-0068909_60	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0068909_61	PHROG	phrog_33061	NA	unknown function
UHGV-0068909_61	eggNOG-mapper	411459.RUMOBE_01712	NA	NA
UHGV-0068909_61	Structural annotation	PF19087, NF033202	NA	NA