UHGV-0068924

Genome information

vOTU vOTU-019616

Genome length 26,377 bps

CDS count 37

Completeness 56.73% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068924
vOTU ID	vOTU-019616
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_123863
BioSample	SAMEA2579950
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.9
Jumbo phage	No

Genome content
Genome length	26,377 bps
GC content	47.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	89.77%
Average CDS length	644.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068924_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0068924_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0068924_1	UniRef90	UniRef90_A0A371ILE1	XRE family transcriptional regulator	NA
UHGV-0068924_1	eggNOG-mapper	445972.ANACOL_04166	Transcriptional regulator	NA
UHGV-0068924_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0068924_1	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0068924_1	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0068924_2	PHROG	phrog_5467	NA	unknown function
UHGV-0068924_2	UniRef90	UniRef90_A0A3A9I074	NA	NA
UHGV-0068924_2	eggNOG-mapper	994573.T472_0211165	NA	NA
UHGV-0068924_2	Pfam	PF10088	NA	DUF2326
UHGV-0068924_2	COG	COG5293	NA	NA
UHGV-0068924_2	Structural annotation	PF10088, MF_00449, TIGR00634, COG5293	NA	NA
UHGV-0068924_3	PHROG	phrog_6259	NA	unknown function
UHGV-0068924_3	eggNOG-mapper	994573.T472_0211170	NA	NA
UHGV-0068924_3	Pfam	PF20292	ABC-three component (ABC-3C) system Middle Component 7	MC7
UHGV-0068924_3	Structural annotation	PF20292, NF008565, COG1733	NA	NA
UHGV-0068924_4	PHROG	phrog_6948	NA	unknown function
UHGV-0068924_4	eggNOG-mapper	994573.T472_0211175	NA	NA
UHGV-0068924_4	Pfam	PF20277	C-terminal domain 11 of the ABC-three component (ABC-3C) systems	CTD11
UHGV-0068924_4	Structural annotation	PF20277	NA	NA
UHGV-0068924_5	PHROG	phrog_11138	NA	unknown function
UHGV-0068924_5	UniRef90	UniRef90_UPI0009BB3802	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0068924_5	eggNOG-mapper	1230342.CTM_16847	DNA-templated transcription, initiation	NA
UHGV-0068924_5	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0068924_5	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0068924_5	Structural annotation	PF08281, MF_00674, NF010500, COG2739	NA	NA
UHGV-0068924_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0068924_6	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0068924_6	UniRef90	UniRef90_A0A1L5FAA6	Phage antirepressor	NA
UHGV-0068924_6	eggNOG-mapper	411490.ANACAC_00755	BRO family, N-terminal domain	NA
UHGV-0068924_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0068924_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0068924_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0068924_6	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0068924_7	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0068924_7	UniRef90	UniRef90_UPI00189DADE5	NA	NA
UHGV-0068924_7	eggNOG-mapper	411490.ANACAC_00754	NA	NA
UHGV-0068924_7	Pfam	PF14359	NA	DUF4406
UHGV-0068924_7	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0068924_8	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0068924_8	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0068924_8	UniRef90	UniRef90_R5GNJ3	Phage/plasmid primase P4 family domain-containing protein	NA
UHGV-0068924_8	eggNOG-mapper	411490.ANACAC_00753	Phage plasmid primase, P4 family	NA
UHGV-0068924_8	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0068924_8	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0068924_8	Pfam	PF19263	NA	DUF5906
UHGV-0068924_8	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0068924_8	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0068924_8	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0068924_8	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0068924_9	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0068924_9	UniRef90	UniRef90_R5GJ79	VRR-NUC domain-containing protein	NA
UHGV-0068924_9	eggNOG-mapper	411490.ANACAC_00752	VRR-NUC domain protein	NA
UHGV-0068924_9	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0068924_10	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0068924_10	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0068924_10	UniRef90	UniRef90_R5GX09	Helicase ATP-binding domain-containing protein	NA
UHGV-0068924_10	eggNOG-mapper	1235799.C818_01033	SNF2 family N-terminal domain	NA
UHGV-0068924_10	PADLOC	DpdE_00012	DpdE	DPD
UHGV-0068924_10	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0068924_10	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0068924_10	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0068924_11	PHROG	phrog_7024	NA	unknown function
UHGV-0068924_11	eggNOG-mapper	663278.Ethha_1824	NA	NA
UHGV-0068924_11	AcrCatalog	cluster_1398	NA	NA
UHGV-0068924_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0068924_12	UniRef90	UniRef90_UPI001D0605E0	NA	NA
UHGV-0068924_12	eggNOG-mapper	1216932.CM240_1403	sigma factor activity	NA
UHGV-0068924_12	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0068924_12	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0068924_13	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0068924_13	UniRef90	UniRef90_UPI001D092ADA	P27 family phage terminase small subunit	NA
UHGV-0068924_13	eggNOG-mapper	1118057.CAGX01000043_gene499	NA	NA
UHGV-0068924_13	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0068924_13	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0068924_14	eggNOG-mapper	1235799.C818_01029	NA	NA
UHGV-0068924_14	AcrCatalog	cluster_9768	NA	NA
UHGV-0068924_15	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0068924_15	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0068924_15	UniRef90	UniRef90_R6SK58	Methyltransferase	NA
UHGV-0068924_15	eggNOG-mapper	1235799.C818_01028	DNA methylase	NA
UHGV-0068924_15	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0068924_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0068924_15	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0068924_15	COG	COG0863	DNA modification methylase	NA
UHGV-0068924_15	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0068924_16	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0068924_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0068924_16	UniRef90	UniRef90_A0A3D2CNF7	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0068924_16	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0068924_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0068924_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0068924_16	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0068924_17	UniRef90	UniRef90_R5CWD1	Arc domain-containing protein	NA
UHGV-0068924_17	eggNOG-mapper	663278.Ethha_1288	NA	NA
UHGV-0068924_17	COG	COG4877	NA	NA
UHGV-0068924_17	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0068924_18	PHROG	phrog_289	GTP-binding domain	other
UHGV-0068924_18	UniRef90	UniRef90_A0A7X6CWD5	NA	NA
UHGV-0068924_18	eggNOG-mapper	877414.ATWA01000045_gene1862	DNA mediated transformation	NA
UHGV-0068924_18	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-0068924_18	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-0068924_18	Structural annotation	PF18306, MF_01575, TIGR00732, COG0758	NA	NA
UHGV-0068924_19	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0068924_19	UniRef90	UniRef90_A0A2R2ZJK5	Virulence-like protein	NA
UHGV-0068924_19	eggNOG-mapper	665956.HMPREF1032_02276	NA	NA
UHGV-0068924_19	AcrCatalog	cluster_14489	NA	NA
UHGV-0068924_20	PHROG	phrog_3782	NA	unknown function
UHGV-0068924_20	UniRef90	UniRef90_R6SK65	NA	NA
UHGV-0068924_20	eggNOG-mapper	665956.HMPREF1032_02275	NA	NA
UHGV-0068924_20	Pfam	PF14192	NA	DUF4314
UHGV-0068924_20	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0068924_20	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-0068924_21	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0068924_21	UniRef90	UniRef90_R6RDL0	Putative amidoligase enzyme	NA
UHGV-0068924_21	eggNOG-mapper	573061.Clocel_3982	amidoligase enzyme	NA
UHGV-0068924_21	AcrCatalog	cluster_58247	NA	NA
UHGV-0068924_21	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0068924_21	Structural annotation	PF12224	NA	NA
UHGV-0068924_22	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0068924_22	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0068924_22	UniRef90	UniRef90_R6SK72	GGACT domain-containing protein	NA
UHGV-0068924_22	eggNOG-mapper	1235802.C823_05283	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0068924_22	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0068924_22	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0068924_22	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0068924_23	PHROG	phrog_2945	NA	unknown function
UHGV-0068924_23	UniRef90	UniRef90_R6RDL5	(NiFe) hydrogenase maturation protein HypF	NA
UHGV-0068924_23	eggNOG-mapper	1265507.KB899636_gene1653	NA	NA
UHGV-0068924_24	PHROG	phrog_4709	NA	unknown function
UHGV-0068924_24	eggNOG-mapper	1341157.RF007C_02660	NA	NA
UHGV-0068924_24	AcrCatalog	cluster_3300	NA	NA
UHGV-0068924_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0068924_25	UniRef90	UniRef90_UPI000B7FA7CC	terminase large subunit	NA
UHGV-0068924_25	eggNOG-mapper	1235800.C819_03966	Phage Terminase	NA
UHGV-0068924_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0068924_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0068924_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0068924_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0068924_26	UniRef90	UniRef90_A0A354WRR3	Type II toxin-antitoxin system Phd/YefM family antitoxin	NA
UHGV-0068924_26	eggNOG-mapper	1298920.KI911353_gene5321	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0068924_26	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0068924_26	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0068924_26	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0068924_26	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-0068924_27	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-0068924_27	PHROG	phrog_2455	NA	unknown function
UHGV-0068924_27	UniRef90	UniRef90_A0A1G4WWM4	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0068924_27	eggNOG-mapper	138119.DSY3673	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0068924_27	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0068924_27	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-0068924_27	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-0068924_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0068924_28	UniRef90	UniRef90_A0A1E3BX67	Phage portal protein	NA
UHGV-0068924_28	eggNOG-mapper	665950.HMPREF1025_02651	Phage portal protein	NA
UHGV-0068924_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0068924_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0068924_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0068924_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0068924_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0068924_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0068924_29	UniRef90	UniRef90_R6SK90	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0068924_29	eggNOG-mapper	1216932.CM240_0619	Belongs to the peptidase S14 family	NA
UHGV-0068924_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0068924_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0068924_29	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0068924_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0068924_30	UniRef90	UniRef90_R5GWX2	Phage major capsid protein HK97 family	NA
UHGV-0068924_30	eggNOG-mapper	1216932.CM240_0620	Phage major capsid protein, HK97 family	NA
UHGV-0068924_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0068924_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0068924_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0068924_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0068924_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0068924_31	UniRef90	UniRef90_A0A3D2HPI9	Phage gp6-like head-tail connector protein	NA
UHGV-0068924_31	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-0068924_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0068924_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0068924_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0068924_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-0068924_32	UniRef90	UniRef90_R6RNX0	Putative phage head-tail adaptor	NA
UHGV-0068924_32	eggNOG-mapper	1121289.JHVL01000019_gene664	head-tail	NA
UHGV-0068924_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0068924_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0068924_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0068924_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0068924_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0068924_33	UniRef90	UniRef90_R6RVJ8	HK97 gp10 family phage protein	NA
UHGV-0068924_33	eggNOG-mapper	693746.OBV_41500	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0068924_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0068924_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0068924_33	Structural annotation	TIGR01725	NA	NA
UHGV-0068924_34	PHROG	phrog_78	tail terminator	connector
UHGV-0068924_34	eggNOG-mapper	1230342.CTM_17007	High confidence in function and specificity	NA
UHGV-0068924_34	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0068924_35	PHROG	phrog_88	major tail protein	tail
UHGV-0068924_35	UniRef90	UniRef90_R5GWW6	Phi13 family phage major tail protein	NA
UHGV-0068924_35	eggNOG-mapper	1120978.KB894083_gene900	phage major tail protein, phi13 family	NA
UHGV-0068924_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0068924_35	COG	COG5492	NA	NA
UHGV-0068924_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0068924_36	PHROG	phrog_2115	tail protein	tail
UHGV-0068924_36	UniRef90	UniRef90_A0A223I0Y8	DNA-cytosine methyltransferase	NA
UHGV-0068924_36	eggNOG-mapper	1121428.DESHY_10071___1	NA	NA
UHGV-0068924_36	Structural annotation	PF11836	NA	NA
UHGV-0068924_37	PHROG	phrog_10988	NA	unknown function
UHGV-0068924_37	eggNOG-mapper	720554.Clocl_3670	NA	NA