UHGV-0068947

Genome information

Genome length 29,359 bps

CDS count 50

Completeness 67.30% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068947
vOTU ID	vOTU-015780
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_115176
BioSample	SAMEA2579989
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.33
Jumbo phage	No

Genome content
Genome length	29,359 bps
GC content	28.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.28%
Average CDS length	531.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068947_1	KOfam	K14059	int; integrase	NA
UHGV-0068947_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0068947_1	UniRef90	UniRef90_UPI0018980724	site-specific integrase	NA
UHGV-0068947_1	eggNOG-mapper	272563.CD630_25190	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0068947_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0068947_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0068947_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0068947_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0068947_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0068947_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0068947_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0068947_2	UniRef90	UniRef90_UPI001F33A9FB	helix-turn-helix domain-containing protein	NA
UHGV-0068947_2	eggNOG-mapper	926561.KB900623_gene728	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0068947_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0068947_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0068947_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0068947_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0068947_2	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0068947_3	UniRef90	UniRef90_UPI00165554C2	helix-turn-helix domain-containing protein	NA
UHGV-0068947_3	eggNOG-mapper	195103.CPF_1603	Helix-turn-helix XRE-family like proteins	NA
UHGV-0068947_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0068947_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0068947_4	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0068947_4	UniRef90	UniRef90_UPI000F057B86	Rha family transcriptional regulator	NA
UHGV-0068947_4	eggNOG-mapper	1391647.AVSV01000022_gene2516	ORF6C domain	NA
UHGV-0068947_4	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0068947_4	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0068947_4	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0068947_4	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0068947_4	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0068947_5	UniRef90	UniRef90_UPI0008DA0801	helix-turn-helix domain-containing protein	NA
UHGV-0068947_5	eggNOG-mapper	397290.C810_03774	Helix-turn-helix domain	NA
UHGV-0068947_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0068947_5	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0068947_8	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0068947_8	UniRef90	UniRef90_UPI0018AA9BE6	siphovirus Gp157 family protein	NA
UHGV-0068947_8	eggNOG-mapper	262071.A3QSF2_9CAUD	Siphovirus Gp157	NA
UHGV-0068947_8	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0068947_8	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0068947_10	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0068947_10	UniRef90	UniRef90_UPI0008D93F23	phage recombination protein Bet	NA
UHGV-0068947_10	eggNOG-mapper	272563.CD630_09170	Phage recombination protein Bet	NA
UHGV-0068947_10	Pfam	PF03837	RecT family	RecT
UHGV-0068947_10	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0068947_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0068947_10	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0068947_11	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0068947_11	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0068947_11	UniRef90	UniRef90_UPI0018A8FCD5	DnaD domain protein	NA
UHGV-0068947_11	eggNOG-mapper	290402.Cbei_0892	NA	NA
UHGV-0068947_11	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0068947_11	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0068947_11	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0068947_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0068947_11	Structural annotation	PF01978, TIGR01714, COG3935	NA	NA
UHGV-0068947_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0068947_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0068947_12	UniRef90	UniRef90_UPI0018A97110	ATP-binding protein	NA
UHGV-0068947_12	eggNOG-mapper	1292035.H476_1309	Bacterial dnaA protein	NA
UHGV-0068947_12	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0068947_12	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0068947_12	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0068947_15	UniRef90	UniRef90_UPI0008DA482F	dUTP diphosphatase	NA
UHGV-0068947_15	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0068947_16	UniRef90	UniRef90_UPI0009F68CA6	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	NA
UHGV-0068947_16	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0068947_17	PHROG	phrog_2600	NA	unknown function
UHGV-0068947_17	eggNOG-mapper	1415774.U728_3767	NA	NA
UHGV-0068947_19	PHROG	phrog_5048	NA	unknown function
UHGV-0068947_21	PHROG	phrog_6775	NA	unknown function
UHGV-0068947_21	AcrCatalog	cluster_37489	NA	NA
UHGV-0068947_22	PHROG	phrog_2329	NA	unknown function
UHGV-0068947_22	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0068947_22	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0068947_23	Structural annotation	PF13046	NA	NA
UHGV-0068947_30	PHROG	phrog_21101	NA	unknown function
UHGV-0068947_30	UniRef90	UniRef90_V9HFX8	NA	NA
UHGV-0068947_30	eggNOG-mapper	457396.CSBG_02417	Protein conserved in bacteria	NA
UHGV-0068947_30	Pfam	PF07866	NA	DUF1653
UHGV-0068947_30	COG	COG4728	NA	NA
UHGV-0068947_30	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0068947_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0068947_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0068947_31	UniRef90	UniRef90_UPI0008D9E31D	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0068947_31	eggNOG-mapper	1408823.AXUS01000024_gene2703	crossover junction endodeoxyribonuclease activity	NA
UHGV-0068947_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0068947_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0068947_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0068947_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0068947_32	UniRef90	UniRef90_A0A1C5YUU3	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0068947_32	eggNOG-mapper	1408823.AXUS01000025_gene2668	sigma factor activity	NA
UHGV-0068947_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0068947_32	Structural annotation	PF08281, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0068947_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0068947_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0068947_34	UniRef90	UniRef90_A0A5P3XA19	Terminase small subunit	NA
UHGV-0068947_34	eggNOG-mapper	203119.Cthe_2473	Terminase small subunit	NA
UHGV-0068947_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0068947_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0068947_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0068947_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0068947_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0068947_35	UniRef90	UniRef90_A0A316MS95	PBSX family phage terminase large subunit	NA
UHGV-0068947_35	eggNOG-mapper	1582149.A0A0A8WHN3_9CAUD	Phage terminase large subunit	NA
UHGV-0068947_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0068947_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0068947_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0068947_35	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0068947_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0068947_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0068947_36	UniRef90	UniRef90_UPI0008DAB247	phage portal protein	NA
UHGV-0068947_36	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0068947_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0068947_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0068947_37	PHROG	phrog_918	NA	unknown function
UHGV-0068947_37	UniRef90	UniRef90_UPI0008D94115	NA	NA
UHGV-0068947_37	eggNOG-mapper	888055.HMPREF9015_01979	NA	NA
UHGV-0068947_37	Pfam	PF19791	NA	DUF6275
UHGV-0068947_37	Structural annotation	PF19791	NA	NA
UHGV-0068947_38	PHROG	phrog_21401	pilot protein for DNA ejection	tail
UHGV-0068947_38	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-0068947_38	eggNOG-mapper	1567015.A0A0A7RUI1_9VIRU	Phage Mu protein F like protein	NA
UHGV-0068947_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0068947_39	UniRef90	UniRef90_UPI0008DA0F92	phage scaffolding protein	NA
UHGV-0068947_39	eggNOG-mapper	665959.HMPREF1013_00201	Phage minor structural protein GP20	NA
UHGV-0068947_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0068947_39	Structural annotation	PF06810	NA	NA
UHGV-0068947_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0068947_40	UniRef90	UniRef90_UPI0008DAB71B	capsid protein	NA
UHGV-0068947_40	eggNOG-mapper	1280689.AUJC01000003_gene967	NA	NA
UHGV-0068947_40	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0068947_41	PHROG	phrog_4020	NA	unknown function
UHGV-0068947_41	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-0068947_42	PHROG	phrog_8435	NA	unknown function
UHGV-0068947_42	UniRef90	UniRef90_W6N5C6	Conserved protein	NA
UHGV-0068947_42	eggNOG-mapper	748727.CLJU_c31280	NA	NA
UHGV-0068947_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0068947_43	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0068947_43	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0068947_44	PHROG	phrog_7585	NA	unknown function
UHGV-0068947_44	eggNOG-mapper	1196322.A370_04060	NA	NA
UHGV-0068947_44	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0068947_45	PHROG	phrog_6686	tail tube protein	tail
UHGV-0068947_45	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-0068947_45	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0068947_46	PHROG	phrog_6280	NA	unknown function
UHGV-0068947_46	UniRef90	UniRef90_UPI001C800AF1	esterase	NA
UHGV-0068947_46	eggNOG-mapper	536233.CLO_0548	NA	NA
UHGV-0068947_47	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0068947_47	UniRef90	UniRef90_A0A150FQY7	Phage tail tape measure protein, TP901 family	NA
UHGV-0068947_47	eggNOG-mapper	536233.CLO_0550	phage tail tape measure protein	NA
UHGV-0068947_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0068947_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0068947_47	COG	COG5283	Phage-related tail protein	NA
UHGV-0068947_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0068947_48	PHROG	phrog_36410	NA	unknown function
UHGV-0068947_48	UniRef90	UniRef90_UPI0008D9412B	phage tail family protein	NA
UHGV-0068947_48	eggNOG-mapper	431943.CKL_4056	Phage tail protein	NA
UHGV-0068947_48	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0068947_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0068947_48	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0068947_49	PHROG	phrog_538	minor tail protein	tail
UHGV-0068947_49	UniRef90	UniRef90_UPI0008DB0B08	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0068947_49	eggNOG-mapper	536232.CLM_2044	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0068947_49	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0068947_49	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0068947_50	PHROG	phrog_1220	head protein	head and packaging
UHGV-0068947_50	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0068947_50	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0068947_50	Structural annotation	PF20747	NA	NA