UHGV-0068997

Genome information

Genome length 37,170 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9592

Prediction confidence Confident

Genome information
Genome ID	UHGV-0068997
vOTU ID	vOTU-011076
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_119633
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9592
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.45
Jumbo phage	No

Genome content
Genome length	37,170 bps
GC content	43.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.58%
Average CDS length	543.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0068997_1	UniRef90	UniRef90_A0A3A8U9V6	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0068997_1	eggNOG-mapper	1235792.C808_03099	mRNA binding	NA
UHGV-0068997_1	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0068997_1	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0068997_1	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0068997_2	PHROG	phrog_32635	NA	unknown function
UHGV-0068997_2	UniRef90	UniRef90_A0A1C5MPD4	N-acetylmuramoyl-L-alanine amidase sle1	NA
UHGV-0068997_2	eggNOG-mapper	97139.C824_03356	NA	NA
UHGV-0068997_2	Structural annotation	PF05382	NA	NA
UHGV-0068997_3	PHROG	phrog_443	holin	lysis
UHGV-0068997_3	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0068997_3	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0068997_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0068997_3	Structural annotation	PF16945	NA	NA
UHGV-0068997_4	PHROG	phrog_937	hemolysin	other
UHGV-0068997_4	eggNOG-mapper	478749.BRYFOR_07561	NA	NA
UHGV-0068997_5	PHROG	phrog_5056	NA	unknown function
UHGV-0068997_5	eggNOG-mapper	665950.HMPREF1025_02516	NA	NA
UHGV-0068997_5	Structural annotation	NF040910	NA	NA
UHGV-0068997_6	PHROG	phrog_5056	NA	unknown function
UHGV-0068997_6	eggNOG-mapper	665950.HMPREF1025_02516	NA	NA
UHGV-0068997_6	Structural annotation	NF040910	NA	NA
UHGV-0068997_7	PHROG	phrog_12931	NA	unknown function
UHGV-0068997_7	eggNOG-mapper	665950.HMPREF1025_02518	NA	NA
UHGV-0068997_9	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0068997_9	PHROG	phrog_11157	NA	unknown function
UHGV-0068997_9	UniRef90	UniRef90_A0A7G5N108	Big_13 domain-containing protein	NA
UHGV-0068997_9	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0068997_9	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0068997_9	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0068997_9	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0068997_9	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0068997_10	PHROG	phrog_13141	NA	unknown function
UHGV-0068997_10	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0068997_10	eggNOG-mapper	658655.HMPREF0988_02549	NA	NA
UHGV-0068997_10	Structural annotation	PF20747	NA	NA
UHGV-0068997_11	PHROG	phrog_538	minor tail protein	tail
UHGV-0068997_11	UniRef90	UniRef90_UPI001C3AB50C	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0068997_11	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0068997_11	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0068997_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0068997_12	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0068997_12	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0068997_12	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0068997_13	PHROG	phrog_8927	tail length tape measure protein	tail
UHGV-0068997_13	UniRef90	UniRef90_A0A2V2CUE3	TMP_3 domain-containing protein	NA
UHGV-0068997_13	eggNOG-mapper	1235792.C808_05348	tape measure	NA
UHGV-0068997_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0068997_13	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0068997_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0068997_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0068997_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0068997_14	PHROG	phrog_7423	NA	unknown function
UHGV-0068997_14	UniRef90	UniRef90_A0A429ZWX6	Phenylalanine racemase	NA
UHGV-0068997_14	eggNOG-mapper	1235792.C808_05347	NA	NA
UHGV-0068997_15	UniRef90	UniRef90_C5WIA0	NA	NA
UHGV-0068997_15	eggNOG-mapper	1235792.C808_05346	NA	NA
UHGV-0068997_15	Structural annotation	PF11836	NA	NA
UHGV-0068997_16	PHROG	phrog_1407	major tail protein	tail
UHGV-0068997_16	UniRef90	UniRef90_A0A412AXG9	Phage major tail protein, TP901-1 family	NA
UHGV-0068997_16	eggNOG-mapper	1235792.C808_05345	Phage tail tube protein	NA
UHGV-0068997_16	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0068997_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0068997_16	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0068997_16	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0068997_16	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0068997_17	PHROG	phrog_176	tail terminator	connector
UHGV-0068997_17	UniRef90	UniRef90_A0A7X5EGP2	NA	NA
UHGV-0068997_17	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-0068997_17	Pfam	PF16807	NA	DUF5072
UHGV-0068997_17	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0068997_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0068997_18	UniRef90	UniRef90_UPI00085C141C	HK97 gp10 family phage protein	NA
UHGV-0068997_18	eggNOG-mapper	1235792.C808_05343	NA	NA
UHGV-0068997_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0068997_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0068997_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0068997_20	UniRef90	UniRef90_UPI001CF82054	phage head-tail connector protein	NA
UHGV-0068997_20	eggNOG-mapper	1235792.C808_05341	NA	NA
UHGV-0068997_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0068997_20	Structural annotation	PF05135	NA	NA
UHGV-0068997_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0068997_21	UniRef90	UniRef90_A0A174MF51	S-l_SbsC_C domain-containing protein	NA
UHGV-0068997_21	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0068997_21	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0068997_21	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0068997_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0068997_22	UniRef90	UniRef90_UPI001C3A7FBE	NA	NA
UHGV-0068997_22	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0068997_22	Pfam	PF14265	NA	DUF4355
UHGV-0068997_22	Structural annotation	PF14265	NA	NA
UHGV-0068997_23	KOfam	K07584	NA	NA
UHGV-0068997_23	PHROG	phrog_4478	peptidase	other
UHGV-0068997_23	UniRef90	UniRef90_UPI001E4C016E	ribosomal-processing cysteine protease Prp	NA
UHGV-0068997_23	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0068997_23	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0068997_23	COG	COG2868	NA	NA
UHGV-0068997_23	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0068997_24	KOfam	K03672	trxC; thioredoxin 2 [EC:1.8.1.8]	NA
UHGV-0068997_24	UniRef90	UniRef90_R9JJ17	Thioredoxin domain-containing protein	NA
UHGV-0068997_24	eggNOG-mapper	694429.Pyrfu_1787	Thioredoxin	NA
UHGV-0068997_24	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-0068997_24	COG	COG0526	Thiol-disulfide isomerase or thioredoxin	NA
UHGV-0068997_24	Structural annotation	PF00085, MF_01835, TIGR01068, COG0526	NA	NA
UHGV-0068997_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0068997_26	UniRef90	UniRef90_UPI001AA1BAE0	minor capsid protein	NA
UHGV-0068997_26	eggNOG-mapper	1235792.C808_05333	Phage Mu protein F like protein	NA
UHGV-0068997_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0068997_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0068997_26	COG	COG2369	NA	NA
UHGV-0068997_26	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0068997_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0068997_27	UniRef90	UniRef90_UPI00085BF66C	phage portal protein	NA
UHGV-0068997_27	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0068997_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0068997_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0068997_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0068997_28	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0068997_28	UniRef90	UniRef90_UPI00046F67CE	terminase family protein	NA
UHGV-0068997_28	eggNOG-mapper	1232453.BAIF02000011_gene3352	NA	NA
UHGV-0068997_28	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0068997_29	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0068997_29	UniRef90	UniRef90_UPI001C3AC719	Helix-turn-helix domain-containing protein	NA
UHGV-0068997_29	eggNOG-mapper	1232453.BAIF02000011_gene3351	HNH endonuclease	NA
UHGV-0068997_29	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0068997_29	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0068997_29	Structural annotation	PF07141	NA	NA
UHGV-0068997_30	PHROG	phrog_15411	NA	unknown function
UHGV-0068997_30	UniRef90	UniRef90_R6NXQ9	NA	NA
UHGV-0068997_30	eggNOG-mapper	1499684.CCNP01000020_gene2275	NA	NA
UHGV-0068997_30	Pfam	PF13271	NA	DUF4062
UHGV-0068997_30	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-0068997_30	Structural annotation	PF13271, PF14277, MF_00526, NF006747, NF006931, COG4271, COG3373	NA	NA
UHGV-0068997_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0068997_31	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0068997_31	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0068997_31	Structural annotation	PF02996	NA	NA
UHGV-0068997_35	UniRef90	UniRef90_UPI00092FE47F	NA	NA
UHGV-0068997_36	eggNOG-mapper	97139.C824_05977	NA	NA
UHGV-0068997_39	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0068997_39	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0068997_41	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0068997_41	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0068997_41	UniRef90	UniRef90_A0A2N0K787	PAPS_reduct domain-containing protein	NA
UHGV-0068997_41	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0068997_41	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0068997_41	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0068997_41	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0068997_42	PHROG	phrog_25488	NA	unknown function
UHGV-0068997_43	PHROG	phrog_25488	NA	unknown function
UHGV-0068997_44	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0068997_44	UniRef90	UniRef90_UPI00073F0998	NA	NA
UHGV-0068997_44	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0068997_44	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0068997_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0068997_44	Structural annotation	PF14297	NA	NA
UHGV-0068997_45	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0068997_45	UniRef90	UniRef90_UPI00073E37C2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0068997_45	eggNOG-mapper	742765.HMPREF9457_02108	Endodeoxyribonuclease RusA	NA
UHGV-0068997_45	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0068997_45	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0068997_45	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0068997_46	PHROG	phrog_1029	NA	unknown function
UHGV-0068997_46	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0068997_46	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0068997_47	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0068997_47	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0068997_48	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0068997_48	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0068997_48	UniRef90	UniRef90_UPI00073F0A75	recombinase RecT	NA
UHGV-0068997_48	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0068997_48	Pfam	PF03837	RecT family	RecT
UHGV-0068997_48	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0068997_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0068997_48	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0068997_49	PHROG	phrog_674	NA	unknown function
UHGV-0068997_49	UniRef90	UniRef90_UPI00195E7F83	NA	NA
UHGV-0068997_49	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0068997_49	Pfam	PF07083	NA	DUF1351
UHGV-0068997_49	Structural annotation	PF07083	NA	NA
UHGV-0068997_50	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0068997_50	UniRef90	UniRef90_UPI00073E90D8	YqaJ viral recombinase family protein	NA
UHGV-0068997_50	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0068997_50	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0068997_50	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0068997_50	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0068997_50	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0068997_51	PHROG	phrog_30234	NA	unknown function
UHGV-0068997_51	eggNOG-mapper	33035.JPJF01000071_gene4461	NA	NA
UHGV-0068997_52	eggNOG-mapper	411461.DORFOR_00023	NA	NA
UHGV-0068997_57	PHROG	phrog_1090	NA	unknown function
UHGV-0068997_57	eggNOG-mapper	1234679.BN424_2630	NA	NA
UHGV-0068997_57	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-0068997_59	UniRef90	UniRef90_A0A8E3MXF5	Helix-turn-helix transcriptional regulator	NA
UHGV-0068997_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0068997_59	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0068997_60	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0068997_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0068997_60	UniRef90	UniRef90_A0A8E3MXU9	Helix-turn-helix domain-containing protein	NA
UHGV-0068997_60	eggNOG-mapper	1235835.C814_03415	helix-turn-helix	NA
UHGV-0068997_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0068997_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0068997_60	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0068997_61	PHROG	phrog_87	metallo-protease	other
UHGV-0068997_61	UniRef90	UniRef90_A0A3E3JY97	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0068997_61	eggNOG-mapper	658655.HMPREF0988_02595	Zn peptidase	NA
UHGV-0068997_61	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0068997_61	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0068997_61	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0068997_62	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0068997_62	UniRef90	UniRef90_A0A7G5MY61	Phage_Mu_F domain-containing protein	NA
UHGV-0068997_62	eggNOG-mapper	936154.STP_1270	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0068997_62	COG	COG2369	NA	NA
UHGV-0068997_63	KOfam	K14059	int; integrase	NA
UHGV-0068997_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0068997_63	UniRef90	UniRef90_UPI00040E88F0	site-specific integrase	NA
UHGV-0068997_63	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0068997_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0068997_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0068997_63	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA