UHGV-0069001

Genome information

Genome length 36,154 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069001
vOTU ID	vOTU-010032
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_125147
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.7
Jumbo phage	No

Genome content
Genome length	36,154 bps
GC content	44.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	95.28%
Average CDS length	607.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069001_1	PHROG	phrog_13890	NA	unknown function
UHGV-0069001_1	eggNOG-mapper	411468.CLOSCI_01452	NA	NA
UHGV-0069001_2	KOfam	K14059	int; integrase	NA
UHGV-0069001_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0069001_2	UniRef90	UniRef90_A0A1Q6MGA4	Site-specific integrase	NA
UHGV-0069001_2	eggNOG-mapper	742741.HMPREF9475_00397	Phage integrase family	NA
UHGV-0069001_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069001_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069001_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0069001_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0069001_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0069001_4	UniRef90	UniRef90_A0A1Q6MG32	HicB family protein	NA
UHGV-0069001_4	eggNOG-mapper	397287.C807_02051	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0069001_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0069001_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0069001_4	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0069001_5	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0069001_5	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0069001_5	UniRef90	UniRef90_A0A3R6X664	Addiction module toxin, HicA family	NA
UHGV-0069001_5	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0069001_5	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0069001_5	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0069001_5	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0069001_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0069001_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0069001_7	UniRef90	UniRef90_R5VT81	LexA repressor	NA
UHGV-0069001_7	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0069001_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069001_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0069001_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0069001_7	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0069001_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0069001_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069001_8	UniRef90	UniRef90_R5WNF4	HTH cro/C1-type domain-containing protein	NA
UHGV-0069001_8	eggNOG-mapper	279010.BL00668	Helix-turn-helix XRE-family like proteins	NA
UHGV-0069001_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069001_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0069001_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0069001_11	KOfam	K03744	lemA; LemA protein	NA
UHGV-0069001_11	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0069001_11	UniRef90	UniRef90_A0A414ZQW9	LemA family protein	NA
UHGV-0069001_11	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0069001_11	Pfam	PF04011	LemA family	LemA
UHGV-0069001_11	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0069001_11	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0069001_12	PHROG	phrog_3886	NA	unknown function
UHGV-0069001_12	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0069001_14	Structural annotation	PF19005	NA	NA
UHGV-0069001_15	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0069001_15	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0069001_15	UniRef90	UniRef90_UPI0019570FFD	N-6 DNA methylase	NA
UHGV-0069001_15	eggNOG-mapper	1401065.HMPREF2130_08355	PFAM N-6 DNA methylase	NA
UHGV-0069001_15	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0069001_15	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0069001_15	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0069001_15	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0069001_16	PHROG	phrog_6058	NA	unknown function
UHGV-0069001_16	UniRef90	UniRef90_A0A7X9GS36	Helix-turn-helix domain-containing protein	NA
UHGV-0069001_16	eggNOG-mapper	742823.HMPREF9465_00186	NA	NA
UHGV-0069001_16	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0069001_18	PHROG	phrog_20014	NA	unknown function
UHGV-0069001_18	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0069001_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0069001_19	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0069001_19	Structural annotation	PF01446	NA	NA
UHGV-0069001_20	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0069001_20	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0069001_20	UniRef90	UniRef90_A0A1Q6MG39	RNase H type-1 domain-containing protein	NA
UHGV-0069001_20	eggNOG-mapper	123214.PERMA_0423	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0069001_20	Pfam	PF00075	RNase H	RNase_H
UHGV-0069001_20	COG	COG0328	Ribonuclease HI	NA
UHGV-0069001_21	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0069001_21	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0069001_21	UniRef90	UniRef90_A0A413Z5T1	DNA adenine methylase	NA
UHGV-0069001_21	eggNOG-mapper	1511.CLOST_1547	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0069001_21	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0069001_21	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0069001_21	COG	COG0338	DNA-adenine methylase	NA
UHGV-0069001_21	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0069001_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0069001_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0069001_22	UniRef90	UniRef90_A0A3A6J7Y8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0069001_22	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0069001_22	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0069001_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0069001_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0069001_22	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0069001_24	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0069001_26	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-0069001_27	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-0069001_28	PHROG	phrog_7566	NA	unknown function
UHGV-0069001_28	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0069001_29	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0069001_29	PHROG	phrog_5696	NA	unknown function
UHGV-0069001_29	UniRef90	UniRef90_A0A1Q6MG41	N6_Mtase domain-containing protein	NA
UHGV-0069001_29	eggNOG-mapper	1235457.C404_25710	N-6 DNA Methylase	NA
UHGV-0069001_29	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0069001_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0069001_29	Structural annotation	COG0286	NA	NA
UHGV-0069001_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0069001_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0069001_30	UniRef90	UniRef90_A0A6L5YHS5	Tyrosine-type recombinase/integrase	NA
UHGV-0069001_30	eggNOG-mapper	1161413.HMPREF1510_0782	Belongs to the 'phage' integrase family	NA
UHGV-0069001_30	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0069001_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069001_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0069001_30	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0069001_31	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0069001_31	UniRef90	UniRef90_A0A3D5LSK2	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0069001_31	eggNOG-mapper	1321782.HMPREF1986_02257	NA	NA
UHGV-0069001_31	Pfam	PF14359	NA	DUF4406
UHGV-0069001_31	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0069001_32	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0069001_33	PHROG	phrog_625	NA	unknown function
UHGV-0069001_33	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-0069001_33	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0069001_33	Structural annotation	PF12961, COG2028	NA	NA
UHGV-0069001_36	PHROG	phrog_11237	NA	unknown function
UHGV-0069001_36	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-0069001_37	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0069001_37	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069001_37	UniRef90	UniRef90_A0A1Q6MG73	HNH domain-containing protein	NA
UHGV-0069001_37	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0069001_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0069001_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0069001_38	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0069001_38	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0069001_38	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0069001_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0069001_38	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0069001_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0069001_39	UniRef90	UniRef90_A0A1Q6MG31	Terminase	NA
UHGV-0069001_39	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0069001_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0069001_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0069001_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0069001_39	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0069001_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0069001_40	UniRef90	UniRef90_A0A1Q6MFZ4	Phage portal protein	NA
UHGV-0069001_40	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0069001_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0069001_40	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0069001_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0069001_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0069001_41	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0069001_41	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0069001_41	UniRef90	UniRef90_A0A1Q6MG19	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0069001_41	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0069001_41	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0069001_41	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0069001_41	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0069001_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0069001_42	UniRef90	UniRef90_A0A412EM78	Phage major capsid protein	NA
UHGV-0069001_42	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0069001_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0069001_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0069001_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069001_42	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0069001_43	PHROG	phrog_749	NA	unknown function
UHGV-0069001_43	UniRef90	UniRef90_W0FM58	Gp6 protein	NA
UHGV-0069001_43	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0069001_44	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0069001_44	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0069001_44	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0069001_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0069001_45	eggNOG-mapper	1384484.AEQU_1177	NA	NA
UHGV-0069001_45	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0069001_46	PHROG	phrog_5509	neck protein	connector
UHGV-0069001_46	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0069001_46	eggNOG-mapper	1347392.CCEZ01000045_gene11	NA	NA
UHGV-0069001_46	Structural annotation	TIGR01725	NA	NA
UHGV-0069001_47	UniRef90	UniRef90_A0A374TPV8	Phage tail protein	NA
UHGV-0069001_47	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0069001_47	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0069001_49	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0069001_49	UniRef90	UniRef90_A0A1Q6MG21	PhageMin_Tail domain-containing protein	NA
UHGV-0069001_49	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0069001_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0069001_49	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0069001_49	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0069001_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0069001_50	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0069001_50	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0069001_50	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0069001_51	PHROG	phrog_538	minor tail protein	tail
UHGV-0069001_51	UniRef90	UniRef90_W0FH81	Phage head fiber protein	NA
UHGV-0069001_51	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0069001_51	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0069001_52	PHROG	phrog_9994	NA	unknown function
UHGV-0069001_52	UniRef90	UniRef90_A0A173RZM4	Phage-related holin (Lysis protein)	NA
UHGV-0069001_52	eggNOG-mapper	1121866.AUGK01000014_gene2043	tail collar domain protein	NA
UHGV-0069001_52	COG	COG4675	Phage tail collar domain	NA
UHGV-0069001_52	Structural annotation	PF20747	NA	NA
UHGV-0069001_53	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0069001_55	PHROG	phrog_1009	NA	unknown function
UHGV-0069001_55	UniRef90	UniRef90_A0A1Q6MFX3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0069001_55	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0069001_56	PHROG	phrog_18218	NA	unknown function
UHGV-0069001_56	UniRef90	UniRef90_A0A374AVT4	Ribonuclease	NA
UHGV-0069001_56	eggNOG-mapper	411474.COPEUT_02638	NA	NA
UHGV-0069001_56	Structural annotation	PF06946	NA	NA
UHGV-0069001_57	KOfam	K07273	acm; lysozyme	NA
UHGV-0069001_57	PHROG	phrog_291	endolysin	lysis
UHGV-0069001_57	UniRef90	UniRef90_A0A3R6RNG6	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0069001_57	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-0069001_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0069001_57	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0069001_57	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0069001_57	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA