UHGV-0069013

Genome information

Genome length 37,821 bps

CDS count 58

Completeness 93.86% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069013
vOTU ID	vOTU-014192
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_112728
BioSample	SAMEA2579980
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.82
Jumbo phage	No

Genome content
Genome length	37,821 bps
GC content	39.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.51%
Average CDS length	619.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069013_1	PHROG	phrog_3558	tail protein	tail
UHGV-0069013_1	UniRef90	UniRef90_UPI000E5CB7B2	phage tail protein	NA
UHGV-0069013_1	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0069013_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0069013_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0069013_1	COG	COG4926	Phage-related protein	NA
UHGV-0069013_1	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0069013_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0069013_2	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0069013_2	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0069013_2	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0069013_3	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0069013_3	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0069013_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0069013_3	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0069013_4	UniRef90	UniRef90_A0A0D0RHE1	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-0069013_5	PHROG	phrog_1021	NA	unknown function
UHGV-0069013_5	eggNOG-mapper	1443125.Z962_05605	NA	NA
UHGV-0069013_7	PHROG	phrog_885	major tail protein	tail
UHGV-0069013_7	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0069013_7	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0069013_8	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0069013_8	Structural annotation	PF12691	NA	NA
UHGV-0069013_9	UniRef90	UniRef90_A0A374UQG1	HK97 gp10 family phage protein	NA
UHGV-0069013_9	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0069013_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0069013_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0069013_10	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0069013_10	UniRef90	UniRef90_A0A416AFR5	Head-tail adaptor protein	NA
UHGV-0069013_10	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0069013_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0069013_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0069013_11	PHROG	phrog_1236	head protein	head and packaging
UHGV-0069013_11	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0069013_11	Structural annotation	PF05135	NA	NA
UHGV-0069013_13	PHROG	phrog_212	major head protein	head and packaging
UHGV-0069013_13	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-0069013_13	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0069013_13	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0069013_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0069013_14	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0069013_14	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0069013_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0069013_14	Structural annotation	PF06810	NA	NA
UHGV-0069013_15	UniRef90	UniRef90_UPI001C3B0341	CHAP domain-containing protein	NA
UHGV-0069013_15	eggNOG-mapper	552396.HMPREF0863_02311	CHAP domain	NA
UHGV-0069013_15	Pfam	PF05257	CHAP domain	CHAP
UHGV-0069013_15	COG	COG3942	Surface antigen	NA
UHGV-0069013_15	Structural annotation	TIGR02594, COG3942	NA	NA
UHGV-0069013_16	PHROG	phrog_18218	NA	unknown function
UHGV-0069013_16	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0069013_16	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-0069013_17	PHROG	phrog_1863	NA	unknown function
UHGV-0069013_17	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0069013_18	Structural annotation	PF15911	NA	NA
UHGV-0069013_19	PHROG	phrog_372	tail protein	tail
UHGV-0069013_19	UniRef90	UniRef90_UPI000E5CC2C3	NA	NA
UHGV-0069013_19	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0069013_19	Pfam	PF05895	NA	DUF859
UHGV-0069013_19	COG	COG4675	Phage tail collar domain	NA
UHGV-0069013_19	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0069013_20	UniRef90	UniRef90_A0A416UY02	Glutamyl-tRNA amidotransferase	NA
UHGV-0069013_21	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0069013_21	UniRef90	UniRef90_A0A3R6VT31	Phage_Mu_F domain-containing protein	NA
UHGV-0069013_21	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0069013_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0069013_21	COG	COG2369	NA	NA
UHGV-0069013_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0069013_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0069013_22	UniRef90	UniRef90_A0A3A6J7Z8	Phage portal protein	NA
UHGV-0069013_22	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0069013_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069013_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0069013_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069013_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0069013_23	UniRef90	UniRef90_UPI000E5CEDAF	PBSX family phage terminase large subunit	NA
UHGV-0069013_23	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-0069013_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0069013_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0069013_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069013_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069013_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069013_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0069013_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0069013_24	UniRef90	UniRef90_A0A6N7XHE4	Terminase small subunit	NA
UHGV-0069013_24	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0069013_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0069013_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0069013_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0069013_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069013_25	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0069013_25	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0069013_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0069013_25	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0069013_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0069013_27	UniRef90	UniRef90_A0A3R6FRA8	Restriction alleviation protein, Lar family	NA
UHGV-0069013_27	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0069013_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0069013_27	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0069013_28	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0069013_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069013_30	PHROG	phrog_874	NA	unknown function
UHGV-0069013_30	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0069013_30	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0069013_30	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0069013_31	PHROG	phrog_20593	NA	unknown function
UHGV-0069013_32	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0069013_32	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0069013_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0069013_33	PHROG	phrog_8470	NA	unknown function
UHGV-0069013_33	UniRef90	UniRef90_UPI001C0EC255	PcfJ domain-containing protein	NA
UHGV-0069013_33	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0069013_33	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0069013_33	Structural annotation	PF14284	NA	NA
UHGV-0069013_34	PHROG	phrog_7445	NA	unknown function
UHGV-0069013_34	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0069013_34	Structural annotation	PF14058	NA	NA
UHGV-0069013_35	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069013_35	UniRef90	UniRef90_A0A356C4U7	Replisome organizer	NA
UHGV-0069013_35	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0069013_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0069013_35	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0069013_37	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0069013_37	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0069013_37	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0069013_37	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0069013_38	eggNOG-mapper	1203606.HMPREF1526_01684	NA	NA
UHGV-0069013_39	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069013_39	UniRef90	UniRef90_UPI001C0F849C	NA	NA
UHGV-0069013_39	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0069013_39	Pfam	PF06356	NA	DUF1064
UHGV-0069013_39	Structural annotation	PF06356	NA	NA
UHGV-0069013_40	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0069013_40	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069013_40	UniRef90	UniRef90_A0A1C5PRW1	p33	NA
UHGV-0069013_40	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0069013_40	Pfam	PF03837	RecT family	RecT
UHGV-0069013_40	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0069013_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0069013_40	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0069013_43	PHROG	phrog_674	NA	unknown function
UHGV-0069013_43	UniRef90	UniRef90_A0A417W7T9	NA	NA
UHGV-0069013_43	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0069013_43	Pfam	PF07083	NA	DUF1351
UHGV-0069013_43	Structural annotation	PF07083	NA	NA
UHGV-0069013_44	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0069013_44	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0069013_44	UniRef90	UniRef90_E7GTS2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0069013_44	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0069013_44	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0069013_44	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0069013_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0069013_44	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0069013_45	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069013_45	UniRef90	UniRef90_A0A1C5PRT3	Putative phage-type endonuclease	NA
UHGV-0069013_45	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0069013_45	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0069013_45	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0069013_45	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0069013_45	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0069013_47	Structural annotation	PF00412	NA	NA
UHGV-0069013_48	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0069013_48	PHROG	phrog_19890	NA	unknown function
UHGV-0069013_48	UniRef90	UniRef90_A0A350VVB0	SLT domain-containing protein	NA
UHGV-0069013_48	eggNOG-mapper	946235.CAER01000058_gene3062	Transglycosylase SLT domain	NA
UHGV-0069013_48	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0069013_48	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0069013_48	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0069013_51	PHROG	phrog_3240	NA	unknown function
UHGV-0069013_51	eggNOG-mapper	320841.Q4ZC34_9CAUD	NA	NA
UHGV-0069013_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069013_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069013_53	UniRef90	UniRef90_UPI001C1244F8	helix-turn-helix transcriptional regulator	NA
UHGV-0069013_53	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0069013_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0069013_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069013_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069013_55	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0069013_55	UniRef90	UniRef90_UPI001C10E005	helix-turn-helix domain-containing protein	NA
UHGV-0069013_55	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0069013_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069013_55	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0069013_55	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0069013_56	PHROG	phrog_87	metallo-protease	other
UHGV-0069013_56	UniRef90	UniRef90_S0J0Z9	Peptidase_M78 domain-containing protein	NA
UHGV-0069013_56	eggNOG-mapper	1235790.C805_00591	Zn peptidase	NA
UHGV-0069013_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0069013_56	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0069013_56	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0069013_57	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0069013_57	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069013_57	UniRef90	UniRef90_UPI00156F0B88	type I restriction endonuclease	NA
UHGV-0069013_57	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0069013_57	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0069013_57	COG	COG4748	NA	NA
UHGV-0069013_57	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0069013_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0069013_58	PHROG	phrog_95	integrase	integration and excision
UHGV-0069013_58	UniRef90	UniRef90_R7MZ39	Recombinase family protein	NA
UHGV-0069013_58	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0069013_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0069013_58	Pfam	PF07508	Recombinase	Recombinase
UHGV-0069013_58	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0069013_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0069013_58	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA