UHGV-0069064

Genome information

Genome length 35,428 bps

CDS count 82

Completeness 56.85% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069064
vOTU ID	vOTU-029784
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_107803
BioSample	SAMEA2580091
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-1.98
Jumbo phage	No

Genome content
Genome length	35,428 bps
GC content	54.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	82
CDS density	84.73%
Average CDS length	371.01 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069064_2	UniRef90	UniRef90_UPI000E51BFD6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0069064_2	eggNOG-mapper	1435051.BMOU_0266	NA	NA
UHGV-0069064_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0069064_3	UniRef90	UniRef90_A0A4R0U2P5	Helix-turn-helix domain-containing protein	NA
UHGV-0069064_3	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0069064_3	Structural annotation	PF01381, MF_00535, NF041951, COG3093	NA	NA
UHGV-0069064_4	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0069064_9	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0069064_9	PHROG	phrog_200	lipoprotein	other
UHGV-0069064_9	UniRef90	UniRef90_V6XY81	PHB domain-containing protein	NA
UHGV-0069064_9	eggNOG-mapper	76636.JOEC01000002_gene2577	prohibitin homologues	NA
UHGV-0069064_9	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0069064_9	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0069064_9	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0069064_10	eggNOG-mapper	888439.HMPREF9240_01816	BRO family, N-terminal domain	NA
UHGV-0069064_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0069064_12	UniRef90	UniRef90_UPI000F4D02D5	DivIVA domain-containing protein	NA
UHGV-0069064_12	eggNOG-mapper	1147128.BAST_0508	DivIVA protein	NA
UHGV-0069064_12	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0069064_12	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0069064_12	Structural annotation	MF_02011	NA	NA
UHGV-0069064_13	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0069064_13	UniRef90	UniRef90_V6XW23	NA	NA
UHGV-0069064_13	eggNOG-mapper	1687.BCOR_0988	NA	NA
UHGV-0069064_13	Pfam	PF12684	NA	DUF3799
UHGV-0069064_13	Structural annotation	PF12684, MF_03030, TIGR01896, COG5377	NA	NA
UHGV-0069064_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069064_14	UniRef90	UniRef90_A0A2N0T1Z7	Recombination protein-phage associated	NA
UHGV-0069064_14	eggNOG-mapper	363253.LI0182	ERF superfamily	NA
UHGV-0069064_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0069064_14	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0069064_15	Structural annotation	TIGR00739	NA	NA
UHGV-0069064_16	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0069064_17	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069064_17	UniRef90	UniRef90_A0A6I1CSY8	C2H2-type domain-containing protein	NA
UHGV-0069064_17	eggNOG-mapper	1437603.BMON_1161	HNH endonuclease	NA
UHGV-0069064_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0069064_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0069064_20	Structural annotation	TIGR00739, COG1862	NA	NA
UHGV-0069064_23	PHROG	phrog_6504	NA	unknown function
UHGV-0069064_25	PHROG	phrog_774	NA	unknown function
UHGV-0069064_25	UniRef90	UniRef90_W6F043	NA	NA
UHGV-0069064_25	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-0069064_25	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0069064_31	Structural annotation	PF11180, TIGR04550, COG4226	NA	NA
UHGV-0069064_32	Structural annotation	PF17259, COG4095	NA	NA
UHGV-0069064_35	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069064_35	UniRef90	UniRef90_G1FMW8	Holliday junction resolvase	NA
UHGV-0069064_35	eggNOG-mapper	1203568.HMPREF1484_00227	NA	NA
UHGV-0069064_35	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0069064_38	PHROG	phrog_2089	NA	unknown function
UHGV-0069064_38	UniRef90	UniRef90_A0A1V8RER5	NA	NA
UHGV-0069064_39	Structural annotation	NF007260	NA	NA
UHGV-0069064_41	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0069064_45	UniRef90	UniRef90_UPI001A956D64	zinc-ribbon domain-containing protein	NA
UHGV-0069064_46	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0069064_46	eggNOG-mapper	1394176.AWUO01000014_gene675	NA	NA
UHGV-0069064_46	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0069064_47	eggNOG-mapper	1437605.BACT_1092	NA	NA
UHGV-0069064_48	PHROG	phrog_908	NA	unknown function
UHGV-0069064_48	eggNOG-mapper	1688.BCUN_0617	NA	NA
UHGV-0069064_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0069064_49	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0069064_49	UniRef90	UniRef90_A0A1D7UNM8	Prophage antirepressor	NA
UHGV-0069064_49	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-0069064_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0069064_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0069064_49	COG	COG3617	Prophage antirepressor	NA
UHGV-0069064_49	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0069064_52	PHROG	phrog_17662	NA	unknown function
UHGV-0069064_52	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-0069064_52	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-0069064_52	Structural annotation	MF_03128, TIGR02495, COG2896	NA	NA
UHGV-0069064_61	UniRef90	UniRef90_UPI0010EF86EF	Magnesium chelatase subunit ChlI-like ATPase	NA
UHGV-0069064_63	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0069064_63	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0069064_63	UniRef90	UniRef90_A0A7L9UHP7	Type II toxin-antitoxin system YafQ family toxin	NA
UHGV-0069064_63	eggNOG-mapper	1235794.C811_02112	Bacterial toxin of type II toxin-antitoxin system, YafQ	NA
UHGV-0069064_63	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0069064_63	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0069064_63	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0069064_64	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0069064_64	PHROG	phrog_2737	NA	unknown function
UHGV-0069064_64	UniRef90	UniRef90_A0A1V8RE25	Translation repressor RelB	NA
UHGV-0069064_64	eggNOG-mapper	762211.BSTEL_0269	RelB antitoxin	NA
UHGV-0069064_64	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0069064_64	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0069064_64	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0069064_72	PHROG	phrog_4264	NA	unknown function
UHGV-0069064_72	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA
UHGV-0069064_74	PHROG	phrog_19904	NA	unknown function
UHGV-0069064_75	UniRef90	UniRef90_UPI001BDDB304	toxin-antitoxin system antitoxin subunit	NA
UHGV-0069064_75	eggNOG-mapper	1437610.BREU_1783	NA	NA
UHGV-0069064_76	eggNOG-mapper	78344.BIGA_1553	NA	NA
UHGV-0069064_76	AcrCatalog	cluster_30544	NA	NA
UHGV-0069064_77	UniRef90	UniRef90_A0A1D7UNN5	HTH cro/C1-type domain-containing protein	NA
UHGV-0069064_77	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069064_77	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0069064_79	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0069064_79	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069064_79	UniRef90	UniRef90_A0A3E4S3S1	HNH endonuclease	NA
UHGV-0069064_79	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-0069064_79	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0069064_80	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069064_80	UniRef90	UniRef90_A0A087B681	Putative site-specific recombinase	NA
UHGV-0069064_80	eggNOG-mapper	1349820.M707_02680	HNH endonuclease	NA
UHGV-0069064_80	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0069064_81	PHROG	phrog_226	minor tail protein	tail
UHGV-0069064_81	eggNOG-mapper	566461.SSFG_01019	NA	NA
UHGV-0069064_82	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0069064_82	UniRef90	UniRef90_A0A1D7UNS3	Phage terminase	NA
UHGV-0069064_82	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0069064_82	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0069064_82	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA