UHGV-0069305

Genome information

Genome length 38,144 bps

CDS count 58

Completeness 99.29% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069305
vOTU ID	vOTU-011189
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_128007
BioSample	SAMEA2737692
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.42
Jumbo phage	No

Genome content
Genome length	38,144 bps
GC content	40.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.59%
Average CDS length	597.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069305_1	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0069305_1	UniRef90	UniRef90_B0MGB8	Bacterial group 2 Ig-like protein	NA
UHGV-0069305_1	eggNOG-mapper	411490.ANACAC_02628	Bacterial Ig-like domain 2	NA
UHGV-0069305_1	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0069305_2	UniRef90	UniRef90_UPI001D07F517	helix-turn-helix transcriptional regulator	NA
UHGV-0069305_2	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0069305_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0069305_2	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0069305_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0069305_4	PHROG	phrog_435	endolysin	lysis
UHGV-0069305_4	UniRef90	UniRef90_UPI001D075019	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069305_4	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069305_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0069305_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0069305_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069305_4	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0069305_5	PHROG	phrog_199	holin	lysis
UHGV-0069305_5	UniRef90	UniRef90_UPI001D0918FF	phage holin family protein	NA
UHGV-0069305_5	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0069305_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0069305_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0069305_6	PHROG	phrog_2566	NA	unknown function
UHGV-0069305_6	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0069305_6	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0069305_7	PHROG	phrog_6616	tail protein	tail
UHGV-0069305_7	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-0069305_7	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0069305_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0069305_7	COG	COG4926	Phage-related protein	NA
UHGV-0069305_8	PHROG	phrog_1401	NA	unknown function
UHGV-0069305_8	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0069305_8	Structural annotation	PF07761	NA	NA
UHGV-0069305_9	PHROG	phrog_1194	NA	unknown function
UHGV-0069305_9	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0069305_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0069305_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0069305_10	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0069305_10	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0069305_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0069305_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0069305_11	PHROG	phrog_8355	NA	unknown function
UHGV-0069305_11	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0069305_11	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0069305_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0069305_12	PHROG	phrog_8300	NA	unknown function
UHGV-0069305_12	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0069305_12	Structural annotation	PF06854	NA	NA
UHGV-0069305_13	PHROG	phrog_820	major tail protein	tail
UHGV-0069305_13	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0069305_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0069305_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0069305_14	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0069305_14	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0069305_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0069305_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0069305_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0069305_15	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0069305_16	PHROG	phrog_8710	NA	unknown function
UHGV-0069305_16	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0069305_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0069305_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0069305_17	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0069305_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0069305_18	UniRef90	UniRef90_UPI001D0613D8	phage capsid protein	NA
UHGV-0069305_18	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0069305_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0069305_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0069305_19	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0069305_19	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0069305_20	Structural annotation	PF01281	NA	NA
UHGV-0069305_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0069305_22	UniRef90	UniRef90_UPI001D08F88B	minor capsid protein	NA
UHGV-0069305_22	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0069305_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0069305_22	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0069305_22	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0069305_22	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-0069305_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0069305_23	UniRef90	UniRef90_UPI001D072FCD	capsid protein	NA
UHGV-0069305_23	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0069305_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0069305_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069305_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0069305_24	UniRef90	UniRef90_UPI001D0867BB	terminase	NA
UHGV-0069305_24	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0069305_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069305_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0069305_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0069305_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0069305_25	UniRef90	UniRef90_UPI001D070DF1	terminase small subunit	NA
UHGV-0069305_25	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0069305_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0069305_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0069305_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0069305_26	PHROG	phrog_18586	NA	unknown function
UHGV-0069305_26	UniRef90	UniRef90_UPI001F3082DB	restriction endonuclease	NA
UHGV-0069305_26	eggNOG-mapper	913865.DOT_3033	NA	NA
UHGV-0069305_26	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0069305_26	Structural annotation	PF04471, COG1715	NA	NA
UHGV-0069305_27	eggNOG-mapper	411902.CLOBOL_04414	NA	NA
UHGV-0069305_28	eggNOG-mapper	411902.CLOBOL_04413	NA	NA
UHGV-0069305_28	Structural annotation	PF20505, NF001460, COG2974	NA	NA
UHGV-0069305_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069305_29	UniRef90	UniRef90_UPI001CD68077	NA	NA
UHGV-0069305_29	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-0069305_29	Pfam	PF07374	NA	DUF1492
UHGV-0069305_29	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0069305_30	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0069305_35	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0069305_35	UniRef90	UniRef90_UPI001D06EF89	NA	NA
UHGV-0069305_35	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0069305_35	Pfam	PF06048	NA	DUF927
UHGV-0069305_35	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0069305_35	COG	COG5519	NA	NA
UHGV-0069305_35	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0069305_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0069305_37	UniRef90	UniRef90_UPI001C8D2571	ERCC4 domain-containing protein	NA
UHGV-0069305_37	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0069305_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0069305_38	PHROG	phrog_18107	NA	unknown function
UHGV-0069305_38	eggNOG-mapper	1449050.JNLE01000003_gene3912	NA	NA
UHGV-0069305_38	Structural annotation	PF05037	NA	NA
UHGV-0069305_39	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069305_39	UniRef90	UniRef90_UPI001D05DFA5	ATP-binding protein	NA
UHGV-0069305_39	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0069305_39	Pfam	PF13479	AAA domain	AAA_24
UHGV-0069305_39	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0069305_41	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0069305_41	UniRef90	UniRef90_UPI001D07E623	siphovirus Gp157 family protein	NA
UHGV-0069305_41	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0069305_41	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0069305_41	Structural annotation	PF05565	NA	NA
UHGV-0069305_44	PHROG	phrog_3634	NA	unknown function
UHGV-0069305_44	UniRef90	UniRef90_UPI001D081ED0	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0069305_44	eggNOG-mapper	86416.Clopa_0575	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0069305_44	PADLOC	Effector_00071	TIR	CBASS
UHGV-0069305_44	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0069305_44	Structural annotation	PF13676, MF_03036, TIGR03646, COG4916	NA	NA
UHGV-0069305_48	PHROG	phrog_11939	NA	unknown function
UHGV-0069305_48	eggNOG-mapper	1004785.AMBLS11_01120	NA	NA
UHGV-0069305_48	Structural annotation	PF13031	NA	NA
UHGV-0069305_50	UniRef90	UniRef90_UPI001D08AC69	helix-turn-helix domain-containing protein	NA
UHGV-0069305_50	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0069305_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069305_50	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0069305_51	UniRef90	UniRef90_A0A3R6F768	XRE family transcriptional regulator	NA
UHGV-0069305_51	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0069305_51	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0069305_52	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0069305_52	UniRef90	UniRef90_UPI001D078EEA	Rha family transcriptional regulator	NA
UHGV-0069305_52	eggNOG-mapper	97139.C824_03355	Phage regulatory protein	NA
UHGV-0069305_52	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0069305_52	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0069305_52	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0069305_52	Structural annotation	PF03374, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0069305_53	UniRef90	UniRef90_UPI001D09848E	NA	NA
UHGV-0069305_53	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0069305_53	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0069305_53	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0069305_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069305_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069305_54	UniRef90	UniRef90_UPI001D06325F	helix-turn-helix domain-containing protein	NA
UHGV-0069305_54	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0069305_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069305_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069305_54	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0069305_55	PHROG	phrog_87	metallo-protease	other
UHGV-0069305_55	UniRef90	UniRef90_UPI001D07A6DC	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0069305_55	eggNOG-mapper	1235798.C817_04756	IrrE N-terminal-like domain	NA
UHGV-0069305_55	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0069305_55	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0069305_55	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0069305_56	UniRef90	UniRef90_UPI001D063B64	Ig-like domain-containing protein	NA
UHGV-0069305_56	eggNOG-mapper	1410632.JHWW01000001_gene1140	NA	NA
UHGV-0069305_56	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0069305_56	Structural annotation	PF02368, NF005261, COG3121	NA	NA
UHGV-0069305_57	KOfam	K14059	int; integrase	NA
UHGV-0069305_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0069305_57	UniRef90	UniRef90_A0A4P8IG75	Integrase	NA
UHGV-0069305_57	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-0069305_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069305_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069305_57	Structural annotation	PF00589, MF_02055, TIGR02224, COG4973	NA	NA
UHGV-0069305_58	UniRef90	UniRef90_A0A4P8IFW6	Conserved membrane protein	NA
UHGV-0069305_58	eggNOG-mapper	411490.ANACAC_02630	TraX protein	NA
UHGV-0069305_58	Pfam	PF05857	TraX protein	TraX
UHGV-0069305_58	Structural annotation	PF05857, MF_01949, NF010454	NA	NA