UHGV-0069425

Genome information

vOTU vOTU-019863

Genome length 29,509 bps

CDS count 59

Completeness 73.06% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069425
vOTU ID	vOTU-019863
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_126991
BioSample	SAMEA2737748
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.86
Jumbo phage	No

Genome content
Genome length	29,509 bps
GC content	52.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.65%
Average CDS length	452.95 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069425_1	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0069425_2	PHROG	phrog_17405	head protein	head and packaging
UHGV-0069425_2	Structural annotation	PF11367	NA	NA
UHGV-0069425_3	PHROG	phrog_17977	NA	unknown function
UHGV-0069425_3	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0069425_3	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0069425_5	PHROG	phrog_544	major head protein	head and packaging
UHGV-0069425_5	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0069425_5	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0069425_5	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0069425_6	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0069425_6	Structural annotation	PF06810	NA	NA
UHGV-0069425_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0069425_7	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0069425_7	eggNOG-mapper	386415.NT01CX_2170	NA	NA
UHGV-0069425_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0069425_7	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0069425_8	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0069425_8	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0069425_8	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0069425_8	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0069425_8	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0069425_8	COG	COG2369	NA	NA
UHGV-0069425_8	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0069425_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0069425_9	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0069425_9	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0069425_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069425_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0069425_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069425_10	PHROG	phrog_10250	NA	unknown function
UHGV-0069425_10	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0069425_10	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0069425_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0069425_10	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0069425_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069425_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069425_10	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0069425_11	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0069425_11	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0069425_11	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0069425_11	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0069425_11	Structural annotation	PF16677	NA	NA
UHGV-0069425_15	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0069425_15	Structural annotation	TIGR01636	NA	NA
UHGV-0069425_18	PHROG	phrog_22543	NA	unknown function
UHGV-0069425_18	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0069425_19	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0069425_19	UniRef90	UniRef90_A0A3R6I7I1	Class I SAM-dependent methyltransferase	NA
UHGV-0069425_19	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0069425_19	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0069425_19	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0069425_19	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0069425_19	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0069425_20	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0069425_20	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0069425_20	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0069425_20	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0069425_22	PHROG	phrog_38832	NA	unknown function
UHGV-0069425_22	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0069425_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0069425_26	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0069425_26	UniRef90	UniRef90_UPI001331804A	site-specific DNA-methyltransferase	NA
UHGV-0069425_26	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0069425_26	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0069425_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0069425_26	COG	COG0863	DNA modification methylase	NA
UHGV-0069425_26	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0069425_27	PHROG	phrog_22529	NA	unknown function
UHGV-0069425_27	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0069425_27	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0069425_27	Pfam	PF06725	3D domain	3D
UHGV-0069425_27	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0069425_27	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0069425_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069425_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069425_28	UniRef90	UniRef90_UPI001D0C2D23	helix-turn-helix domain-containing protein	NA
UHGV-0069425_28	eggNOG-mapper	160492.XF_0696	Helix-turn-helix domain	NA
UHGV-0069425_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069425_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069425_28	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0069425_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0069425_30	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069425_30	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0069425_30	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0069425_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0069425_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069425_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0069425_31	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0069425_32	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0069425_32	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0069425_32	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0069425_32	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0069425_32	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0069425_32	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0069425_32	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0069425_33	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0069425_33	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0069425_33	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0069425_33	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0069425_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0069425_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0069425_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0069425_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0069425_34	UniRef90	UniRef90_K1R461	DNA-cytosine methyltransferase	NA
UHGV-0069425_34	eggNOG-mapper	588581.Cpap_0162	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0069425_34	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0069425_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0069425_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0069425_35	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0069425_35	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069425_35	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0069425_35	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0069425_35	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0069425_35	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0069425_35	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-0069425_36	PHROG	phrog_15768	NA	unknown function
UHGV-0069425_36	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0069425_36	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0069425_36	Structural annotation	PF01475, MF_01819, NF006999, COG0735	NA	NA
UHGV-0069425_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0069425_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069425_37	UniRef90	UniRef90_A0A810PUK9	Single-stranded DNA-binding protein	NA
UHGV-0069425_37	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0069425_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0069425_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0069425_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0069425_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0069425_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0069425_38	PHROG	phrog_7566	NA	unknown function
UHGV-0069425_38	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0069425_38	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0069425_39	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0069425_39	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0069425_39	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0069425_39	Structural annotation	PF05772	NA	NA
UHGV-0069425_40	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069425_40	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0069425_40	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0069425_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-0069425_40	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0069425_43	PHROG	phrog_4433	NA	unknown function
UHGV-0069425_43	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0069425_43	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0069425_46	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0069425_46	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0069425_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069425_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069425_47	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0069425_47	eggNOG-mapper	697329.Rumal_2813	Helix-turn-helix XRE-family like proteins	NA
UHGV-0069425_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069425_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069425_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0069425_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069425_48	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-0069425_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069425_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069425_48	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0069425_49	Structural annotation	PF03885	NA	NA
UHGV-0069425_52	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0069425_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069425_52	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0069425_53	KOfam	K14059	int; integrase	NA
UHGV-0069425_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0069425_53	UniRef90	UniRef90_A0A810Q0L1	Tyr recombinase domain-containing protein	NA
UHGV-0069425_53	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0069425_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069425_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0069425_53	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0069425_54	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0069425_55	Structural annotation	PF12510	NA	NA
UHGV-0069425_56	PHROG	phrog_20016	NA	unknown function
UHGV-0069425_56	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0069425_56	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0069425_56	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0069425_57	PHROG	phrog_16490	NA	unknown function
UHGV-0069425_57	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0069425_58	PHROG	phrog_22984	NA	unknown function
UHGV-0069425_59	PHROG	phrog_21718	NA	unknown function