UHGV-0069436

Genome information

Genome length 26,592 bps

CDS count 52

Completeness 59.27% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069436
vOTU ID	vOTU-036914
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_118824
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.12
Jumbo phage	No

Genome content
Genome length	26,592 bps
GC content	51.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	88.40%
Average CDS length	457.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069436_1	UniRef90	UniRef90_A0A257LF86	Metal-dependent hydrolase (Fragment)	NA
UHGV-0069436_1	eggNOG-mapper	1226322.HMPREF1545_00806	Beta-lactamase superfamily domain	NA
UHGV-0069436_1	Pfam	PF13483	Beta-lactamase superfamily domain	Lactamase_B_3
UHGV-0069436_1	COG	COG2220	L-ascorbate lactonase UlaG, metallo-beta-lactamase superfamily	NA
UHGV-0069436_2	KOfam	K14059	int; integrase	NA
UHGV-0069436_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0069436_2	UniRef90	UniRef90_U2QJL8	Site-specific recombinase, phage integrase family	NA
UHGV-0069436_2	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0069436_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069436_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069436_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0069436_4	PHROG	phrog_806	NA	unknown function
UHGV-0069436_4	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0069436_4	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0069436_4	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0069436_4	Pfam	PF11611	NA	DUF4352
UHGV-0069436_4	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0069436_5	Structural annotation	PF06114	NA	NA
UHGV-0069436_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069436_6	UniRef90	UniRef90_A0A1V0QCF9	HTH cro/C1-type domain-containing protein	NA
UHGV-0069436_6	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0069436_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069436_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069436_6	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0069436_7	UniRef90	UniRef90_U2SKF4	Toxin-antitoxin system, antitoxin component, Xre domain protein	NA
UHGV-0069436_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069436_7	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0069436_8	Structural annotation	PF06034	NA	NA
UHGV-0069436_11	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0069436_12	Structural annotation	PF06003, COG5475	NA	NA
UHGV-0069436_13	PHROG	phrog_9562	NA	unknown function
UHGV-0069436_13	UniRef90	UniRef90_A0A1C5W9L2	Type III effector pipB2	NA
UHGV-0069436_13	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0069436_13	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0069436_13	Pfam	PF19062	NA	DUF5758
UHGV-0069436_13	COG	COG1357	NA	NA
UHGV-0069436_13	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-0069436_14	PHROG	phrog_25245	NA	unknown function
UHGV-0069436_14	UniRef90	UniRef90_U2QJB7	3D domain protein	NA
UHGV-0069436_14	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-0069436_14	Pfam	PF06725	3D domain	3D
UHGV-0069436_14	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0069436_14	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0069436_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0069436_15	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0069436_15	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0069436_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0069436_15	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0069436_16	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069436_16	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0069436_16	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0069436_16	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0069436_17	PHROG	phrog_1389	NA	unknown function
UHGV-0069436_17	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0069436_17	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0069436_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0069436_18	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069436_18	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-0069436_18	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0069436_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0069436_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0069436_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069436_19	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0069436_19	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0069436_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0069436_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0069436_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0069436_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0069436_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0069436_20	PHROG	phrog_16304	NA	unknown function
UHGV-0069436_20	UniRef90	UniRef90_A0A417HNC3	NA	NA
UHGV-0069436_20	eggNOG-mapper	498761.HM1_0053	HNH endonuclease	NA
UHGV-0069436_20	Pfam	PF19808	NA	DUF6291
UHGV-0069436_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0069436_20	Structural annotation	PF19808	NA	NA
UHGV-0069436_21	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0069436_21	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0069436_21	UniRef90	UniRef90_U2QJC2	SF4 helicase domain-containing protein	NA
UHGV-0069436_21	eggNOG-mapper	1226322.HMPREF1545_00017	DnaB-like helicase C terminal domain	NA
UHGV-0069436_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0069436_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0069436_21	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-0069436_23	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069436_23	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0069436_23	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0069436_23	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0069436_25	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069436_25	UniRef90	UniRef90_A0A6S6XZY4	HNH endonuclease	NA
UHGV-0069436_25	eggNOG-mapper	1345695.CLSA_c30140	NUMOD4 motif	NA
UHGV-0069436_25	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0069436_25	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0069436_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0069436_26	PHROG	phrog_28782	NA	unknown function
UHGV-0069436_26	UniRef90	UniRef90_A0A316S3E3	Reductase	NA
UHGV-0069436_26	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-0069436_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0069436_26	Structural annotation	PF01507, MF_01161, NF006327, COG0482	NA	NA
UHGV-0069436_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0069436_27	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-0069436_27	eggNOG-mapper	1226322.HMPREF1545_00021	Restriction alleviation protein Lar	NA
UHGV-0069436_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0069436_27	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0069436_27	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0069436_29	PHROG	phrog_25732	NA	unknown function
UHGV-0069436_29	Structural annotation	NF041588	NA	NA
UHGV-0069436_31	PHROG	phrog_25732	NA	unknown function
UHGV-0069436_31	UniRef90	UniRef90_A0A7G9WJW0	Lar family restriction alleviation protein	NA
UHGV-0069436_33	PHROG	phrog_37865	NA	unknown function
UHGV-0069436_35	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0069436_36	PHROG	phrog_7711	NA	unknown function
UHGV-0069436_36	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-0069436_38	PHROG	phrog_22543	NA	unknown function
UHGV-0069436_41	PHROG	phrog_7704	NA	unknown function
UHGV-0069436_41	UniRef90	UniRef90_UPI001921551E	NA	NA
UHGV-0069436_41	eggNOG-mapper	155864.EDL933_3275	NA	NA
UHGV-0069436_41	Pfam	PF04448	NA	DUF551
UHGV-0069436_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0069436_41	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0069436_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069436_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069436_42	UniRef90	UniRef90_UPI00137B0E57	helix-turn-helix transcriptional regulator	NA
UHGV-0069436_42	eggNOG-mapper	608506.COB47_1787	PFAM helix-turn-helix domain protein	NA
UHGV-0069436_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069436_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0069436_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0069436_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069436_43	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0069436_43	UniRef90	UniRef90_A0A096DGF2	HTH cro/C1-type domain-containing protein	NA
UHGV-0069436_43	eggNOG-mapper	742738.HMPREF9460_00887	Helix-turn-helix XRE-family like proteins	NA
UHGV-0069436_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069436_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0069436_45	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0069436_45	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0069436_45	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0069436_45	Structural annotation	PF13542	NA	NA
UHGV-0069436_46	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0069436_46	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0069436_46	UniRef90	UniRef90_A0A1Y4RZ16	Methyltransferase	NA
UHGV-0069436_46	eggNOG-mapper	1378168.N510_02840	DNA methylase	NA
UHGV-0069436_46	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0069436_46	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0069436_46	COG	COG0863	DNA modification methylase	NA
UHGV-0069436_46	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0069436_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069436_47	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0069436_47	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0069436_47	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0069436_47	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0069436_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069436_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069436_47	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0069436_48	PHROG	phrog_533	portal protein	head and packaging
UHGV-0069436_48	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0069436_48	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0069436_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069436_48	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0069436_49	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0069436_49	UniRef90	UniRef90_U2SBR7	Ntox50 domain-containing protein	NA
UHGV-0069436_49	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0069436_49	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0069436_49	COG	COG2369	NA	NA
UHGV-0069436_49	Structural annotation	PF06152	NA	NA
UHGV-0069436_50	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0069436_50	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0069436_50	AcrCatalog	cluster_74817	NA	NA
UHGV-0069436_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-0069436_51	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0069436_51	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0069436_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0069436_51	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0069436_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069436_51	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0069436_52	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA