UHGV-0069480

Genome information

Genome length 22,135 bps

CDS count 29

Completeness 56.07% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069480
vOTU ID	vOTU-039828
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_115542
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.09
Jumbo phage	No

Genome content
Genome length	22,135 bps
GC content	30.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	93.58%
Average CDS length	715.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069480_2	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0069480_2	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0069480_2	UniRef90	UniRef90_UPI0011CAB70D	terminase small subunit	NA
UHGV-0069480_2	eggNOG-mapper	1294142.CINTURNW_1022	Terminase Small Subunit	NA
UHGV-0069480_2	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0069480_2	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0069480_2	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0069480_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069480_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0069480_3	UniRef90	UniRef90_A0A4U9RDJ0	Phage terminase, large subunit	NA
UHGV-0069480_3	eggNOG-mapper	195103.CPF_0949	Phage terminase, large subunit, PBSX family	NA
UHGV-0069480_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0069480_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069480_3	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0069480_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0069480_4	UniRef90	UniRef90_UPI001F31C545	capsid protein	NA
UHGV-0069480_4	eggNOG-mapper	1280692.AUJL01000027_gene2165	NA	NA
UHGV-0069480_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0069480_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0069480_5	UniRef90	UniRef90_UPI000DCF7D77	capsid protein	NA
UHGV-0069480_5	eggNOG-mapper	1280692.AUJL01000027_gene2164	Phage minor capsid protein 2	NA
UHGV-0069480_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0069480_5	COG	COG2369	NA	NA
UHGV-0069480_5	Structural annotation	PF06152	NA	NA
UHGV-0069480_6	eggNOG-mapper	1262449.CP6013_3194	NA	NA
UHGV-0069480_8	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0069480_8	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0069480_8	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0069480_8	Structural annotation	PF10788	NA	NA
UHGV-0069480_9	PHROG	phrog_422	major head protein	head and packaging
UHGV-0069480_9	UniRef90	UniRef90_UPI00115A6E07	capsid protein	NA
UHGV-0069480_9	eggNOG-mapper	195103.CPF_0956	NA	NA
UHGV-0069480_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0069480_10	PHROG	phrog_1378	NA	unknown function
UHGV-0069480_10	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0069480_10	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-0069480_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0069480_11	eggNOG-mapper	1280692.AUJL01000027_gene2158	NA	NA
UHGV-0069480_12	PHROG	phrog_8710	NA	unknown function
UHGV-0069480_12	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0069480_12	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0069480_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0069480_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0069480_13	UniRef90	UniRef90_UPI000C085B44	minor capsid protein	NA
UHGV-0069480_13	eggNOG-mapper	1294142.CINTURNW_1033	NA	NA
UHGV-0069480_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0069480_14	UniRef90	UniRef90_UPI000C08D995	minor capsid protein	NA
UHGV-0069480_14	eggNOG-mapper	1280692.AUJL01000027_gene2155	NA	NA
UHGV-0069480_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0069480_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0069480_15	PHROG	phrog_820	major tail protein	tail
UHGV-0069480_15	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0069480_15	COG	COG5492	NA	NA
UHGV-0069480_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0069480_16	PHROG	phrog_8300	NA	unknown function
UHGV-0069480_16	eggNOG-mapper	1280692.AUJL01000027_gene2153	NA	NA
UHGV-0069480_16	Structural annotation	PF06896	NA	NA
UHGV-0069480_17	PHROG	phrog_8355	NA	unknown function
UHGV-0069480_17	UniRef90	UniRef90_A0A1I2KU85	Bacteriophage Gp15 protein	NA
UHGV-0069480_17	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0069480_17	Structural annotation	PF06854	NA	NA
UHGV-0069480_18	PHROG	phrog_888	NA	unknown function
UHGV-0069480_18	UniRef90	UniRef90_UPI000DCFA674	SHOCT domain-containing protein	NA
UHGV-0069480_18	eggNOG-mapper	565664.EFXG_01134	Short C-terminal domain	NA
UHGV-0069480_18	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0069480_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0069480_19	UniRef90	UniRef90_UPI0003F4F1A1	membrane protein	NA
UHGV-0069480_19	eggNOG-mapper	1294142.CINTURNW_1038	phage tail tape measure protein	NA
UHGV-0069480_19	COG	COG1511	NA	NA
UHGV-0069480_20	PHROG	phrog_1194	NA	unknown function
UHGV-0069480_20	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0069480_20	Pfam	PF20458	NA	DUF6711
UHGV-0069480_20	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0069480_21	PHROG	phrog_1401	NA	unknown function
UHGV-0069480_21	UniRef90	UniRef90_UPI0018ABCBD1	NA	NA
UHGV-0069480_21	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-0069480_21	Structural annotation	PF07761	NA	NA
UHGV-0069480_22	PHROG	phrog_6616	tail protein	tail
UHGV-0069480_22	UniRef90	UniRef90_UPI001C1E1ED3	phage tail protein	NA
UHGV-0069480_22	eggNOG-mapper	457396.CSBG_01060	Phage minor structural protein	NA
UHGV-0069480_22	COG	COG4926	Phage-related protein	NA
UHGV-0069480_22	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0069480_24	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0069480_24	UniRef90	UniRef90_UPI000BE2C14C	BhlA/UviB family holin-like peptide	NA
UHGV-0069480_24	eggNOG-mapper	1415774.U728_1063	BhlA holin family	NA
UHGV-0069480_24	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0069480_25	PHROG	phrog_13256	NA	unknown function
UHGV-0069480_25	eggNOG-mapper	457396.CSBG_01062	NA	NA
UHGV-0069480_26	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0069480_26	PHROG	phrog_435	endolysin	lysis
UHGV-0069480_26	UniRef90	UniRef90_UPI0018A8DEFA	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069480_26	eggNOG-mapper	1033737.CAEV01000007_gene2569	hmm pf01520	NA
UHGV-0069480_26	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0069480_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069480_26	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0069480_28	PHROG	phrog_1758	acetyltransferase	other
UHGV-0069480_28	UniRef90	UniRef90_UPI000772DE58	GNAT family N-acetyltransferase	NA
UHGV-0069480_28	eggNOG-mapper	762966.HMPREF9439_01738	acetyltransferase	NA
UHGV-0069480_28	Pfam	PF13673	Acetyltransferase (GNAT) domain	Acetyltransf_10
UHGV-0069480_28	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0069480_29	UniRef90	UniRef90_UPI00115B56BE	helix-turn-helix domain-containing protein	NA
UHGV-0069480_29	eggNOG-mapper	1196322.A370_05750	Helix-turn-helix domain	NA
UHGV-0069480_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0069480_29	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA