UHGV-0069516

Genome information

Genome length 32,979 bps

CDS count 51

Completeness 70.60% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069516
vOTU ID	vOTU-029857
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_109478
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.09
Jumbo phage	No

Genome content
Genome length	32,979 bps
GC content	55.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.59%
Average CDS length	584.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069516_1	Structural annotation	PF01345, NF041894	NA	NA
UHGV-0069516_2	eggNOG-mapper	1508644.SFBmNL_00103	NA	NA
UHGV-0069516_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0069516_3	PHROG	phrog_1794	amidase	lysis
UHGV-0069516_3	UniRef90	UniRef90_A0A374VU40	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0069516_3	eggNOG-mapper	411473.RUMCAL_00096	Ami_2	NA
UHGV-0069516_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0069516_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0069516_3	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-0069516_4	PHROG	phrog_443	holin	lysis
UHGV-0069516_4	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0069516_4	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0069516_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0069516_4	Structural annotation	PF16945	NA	NA
UHGV-0069516_6	eggNOG-mapper	641112.ACOK01000107_gene766	Putative cell wall binding repeat	NA
UHGV-0069516_6	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0069516_6	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0069516_7	PHROG	phrog_1160	baseplate protein	tail
UHGV-0069516_8	COG	COG3299	NA	NA
UHGV-0069516_9	PHROG	phrog_5218	NA	unknown function
UHGV-0069516_9	UniRef90	UniRef90_UPI0018C25D3A	phage tail tape measure protein	NA
UHGV-0069516_9	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0069516_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0069516_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0069516_11	PHROG	phrog_1778	NA	unknown function
UHGV-0069516_11	Structural annotation	PF16462	NA	NA
UHGV-0069516_12	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0069516_12	UniRef90	UniRef90_R7H535	Phage structure protein	NA
UHGV-0069516_12	eggNOG-mapper	1121091.AUMP01000032_gene3106	NA	NA
UHGV-0069516_12	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0069516_13	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0069516_13	UniRef90	UniRef90_UPI000836ABD3	NA	NA
UHGV-0069516_13	eggNOG-mapper	1236976.JCM16418_800	NA	NA
UHGV-0069516_13	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0069516_14	PHROG	phrog_1232	NA	unknown function
UHGV-0069516_14	eggNOG-mapper	1484479.DI14_04745	NA	NA
UHGV-0069516_14	Structural annotation	PF08873	NA	NA
UHGV-0069516_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0069516_16	PHROG	phrog_222	tail protein	tail
UHGV-0069516_16	UniRef90	UniRef90_A0A6G9L6L4	Tail completion protein	NA
UHGV-0069516_16	eggNOG-mapper	1121091.AUMP01000032_gene3102	NA	NA
UHGV-0069516_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0069516_18	UniRef90	UniRef90_R7H6N6	Phage major capsid protein E	NA
UHGV-0069516_18	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0069516_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0069516_18	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0069516_19	PHROG	phrog_909	major head protein	head and packaging
UHGV-0069516_19	UniRef90	UniRef90_A0A0R1VNK8	NA	NA
UHGV-0069516_19	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-0069516_19	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0069516_20	Pfam	PF14265	NA	DUF4355
UHGV-0069516_21	PHROG	phrog_1048	NA	unknown function
UHGV-0069516_21	UniRef90	UniRef90_R7H3B3	Phage related protein	NA
UHGV-0069516_21	eggNOG-mapper	1445809.A0A0A7AQX0_9CAUD	NA	NA
UHGV-0069516_21	Pfam	PF11195	NA	DUF2829
UHGV-0069516_21	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0069516_21	Structural annotation	PF11195	NA	NA
UHGV-0069516_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0069516_23	UniRef90	UniRef90_A0A2K2TW69	Phage_Mu_F domain-containing protein	NA
UHGV-0069516_23	eggNOG-mapper	1121091.AUMP01000032_gene3100	Phage Mu protein F like protein	NA
UHGV-0069516_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0069516_23	COG	COG2369	NA	NA
UHGV-0069516_23	Structural annotation	PF06152	NA	NA
UHGV-0069516_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0069516_24	UniRef90	UniRef90_UPI00083154D8	phage portal protein	NA
UHGV-0069516_24	eggNOG-mapper	887325.HMPREF0381_0085	Phage portal protein, SPP1 family	NA
UHGV-0069516_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069516_24	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0069516_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0069516_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069516_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0069516_25	UniRef90	UniRef90_R7GTI0	Phage terminase large subunit PBSX family	NA
UHGV-0069516_25	eggNOG-mapper	1235796.C815_00926	phage terminase, large subunit	NA
UHGV-0069516_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0069516_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0069516_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069516_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069516_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069516_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0069516_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0069516_26	UniRef90	UniRef90_R7GUG8	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0069516_26	eggNOG-mapper	1203606.HMPREF1526_00319	Terminase small subunit	NA
UHGV-0069516_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0069516_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0069516_26	Structural annotation	PF03592	NA	NA
UHGV-0069516_27	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0069516_28	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0069516_28	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0069516_28	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0069516_32	PHROG	phrog_824	NA	unknown function
UHGV-0069516_32	UniRef90	UniRef90_R7GUQ9	VRR-NUC domain-containing protein	NA
UHGV-0069516_32	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0069516_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0069516_32	Structural annotation	PF08774	NA	NA
UHGV-0069516_33	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0069516_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0069516_33	UniRef90	UniRef90_R7GSU9	DNA or RNA helicases of superfamily II	NA
UHGV-0069516_33	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0069516_33	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0069516_33	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0069516_33	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0069516_33	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0069516_33	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0069516_34	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0069516_34	UniRef90	UniRef90_A0A1C6ER71	Superfamily II helicase and inactivated derivatives	NA
UHGV-0069516_34	eggNOG-mapper	1007096.BAGW01000023_gene149	NA	NA
UHGV-0069516_34	Pfam	PF06048	NA	DUF927
UHGV-0069516_34	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0069516_34	COG	COG5519	NA	NA
UHGV-0069516_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0069516_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069516_35	UniRef90	UniRef90_R7GSV4	Single-stranded DNA-binding protein	NA
UHGV-0069516_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0069516_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0069516_35	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0069516_36	PHROG	phrog_3657	NA	unknown function
UHGV-0069516_36	eggNOG-mapper	1071073.KI530540_gene3354	NA	NA
UHGV-0069516_36	Structural annotation	PF04404	NA	NA
UHGV-0069516_37	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0069516_37	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0069516_37	UniRef90	UniRef90_R7GUS0	NA	NA
UHGV-0069516_37	eggNOG-mapper	909297.G8CLD3_9CAUD	NA	NA
UHGV-0069516_37	Pfam	PF12684	NA	DUF3799
UHGV-0069516_37	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0069516_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0069516_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0069516_45	UniRef90	UniRef90_UPI001C0D97C0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0069516_45	eggNOG-mapper	1280706.AUJE01000003_gene2202	BRO family, N-terminal domain	NA
UHGV-0069516_45	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0069516_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0069516_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0069516_45	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0069516_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069516_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069516_49	UniRef90	UniRef90_R7F9Y3	Transcriptional regulator	NA
UHGV-0069516_49	eggNOG-mapper	1094508.Tsac_0840	transcriptional regulator, XRE family	NA
UHGV-0069516_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069516_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0069516_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0069516_50	KOfam	K11641	natR; two-component system, LytTR family, response regulator NatR	NA
UHGV-0069516_50	PHROG	phrog_8810	NA	unknown function
UHGV-0069516_50	UniRef90	UniRef90_A0A352TI42	Stage 0 sporulation protein A homolog	NA
UHGV-0069516_50	eggNOG-mapper	657322.FPR_13310	cheY-homologous receiver domain	NA
UHGV-0069516_50	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0069516_50	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0069516_50	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0069516_51	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0069516_51	PHROG	phrog_2737	NA	unknown function
UHGV-0069516_51	UniRef90	UniRef90_R7GTR4	Addiction module antitoxin RelB/DinJ family	NA
UHGV-0069516_51	eggNOG-mapper	718252.FP2_06500	Addiction module antitoxin, RelB DinJ family	NA
UHGV-0069516_51	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0069516_51	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0069516_51	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0069516_51	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA