UHGV-0069599

Genome information

Genome length 30,249 bps

CDS count 45

Completeness 67.37% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069599
vOTU ID	vOTU-041523
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_123741
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.51
Jumbo phage	No

Genome content
Genome length	30,249 bps
GC content	44.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.62%
Average CDS length	632.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069599_1	PHROG	phrog_8710	NA	unknown function
UHGV-0069599_1	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0069599_1	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0069599_2	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0069599_2	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0069599_3	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0069599_3	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0069599_3	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0069599_3	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0069599_3	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0069599_4	PHROG	phrog_820	major tail protein	tail
UHGV-0069599_4	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0069599_4	COG	COG5492	NA	NA
UHGV-0069599_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0069599_5	PHROG	phrog_8300	NA	unknown function
UHGV-0069599_5	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0069599_5	Structural annotation	PF06854	NA	NA
UHGV-0069599_6	PHROG	phrog_8355	NA	unknown function
UHGV-0069599_6	UniRef90	UniRef90_UPI001D07612A	bacteriophage Gp15 family protein	NA
UHGV-0069599_6	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0069599_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0069599_6	Structural annotation	PF06854	NA	NA
UHGV-0069599_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0069599_7	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0069599_7	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0069599_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0069599_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0069599_8	PHROG	phrog_1194	NA	unknown function
UHGV-0069599_8	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0069599_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0069599_9	PHROG	phrog_13879	NA	unknown function
UHGV-0069599_9	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0069599_9	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0069599_11	PHROG	phrog_18725	NA	unknown function
UHGV-0069599_11	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0069599_12	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0069599_13	eggNOG-mapper	411902.CLOBOL_00121	nuclear chromosome segregation	NA
UHGV-0069599_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0069599_15	PHROG	phrog_1382	NA	unknown function
UHGV-0069599_15	UniRef90	UniRef90_A0A3E2UAD4	ASCH domain-containing protein	NA
UHGV-0069599_15	eggNOG-mapper	1140002.I570_03996	NA	NA
UHGV-0069599_15	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0069599_15	Structural annotation	NF040910	NA	NA
UHGV-0069599_16	PHROG	phrog_1382	NA	unknown function
UHGV-0069599_16	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-0069599_16	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0069599_17	PHROG	phrog_199	holin	lysis
UHGV-0069599_17	UniRef90	UniRef90_UPI001178BDD2	phage holin family protein	NA
UHGV-0069599_17	eggNOG-mapper	411902.CLOBOL_00117	Bacteriophage holin family	NA
UHGV-0069599_17	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0069599_17	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0069599_17	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0069599_17	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0069599_18	PHROG	phrog_19695	NA	unknown function
UHGV-0069599_18	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0069599_18	Structural annotation	PF10651	NA	NA
UHGV-0069599_19	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-0069599_19	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0069599_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0069599_20	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0069599_20	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0069599_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0069599_20	COG	COG2369	NA	NA
UHGV-0069599_20	Structural annotation	PF06152	NA	NA
UHGV-0069599_21	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0069599_21	UniRef90	UniRef90_A0A173R8U8	Ribbon-helix-helix domain	NA
UHGV-0069599_21	eggNOG-mapper	476272.RUMHYD_01909	Ribbon-helix-helix domain	NA
UHGV-0069599_21	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0069599_21	Structural annotation	PF12651, COG4710	NA	NA
UHGV-0069599_22	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069599_22	UniRef90	UniRef90_A0A396KBA8	AP2 domain-containing protein	NA
UHGV-0069599_22	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0069599_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0069599_23	UniRef90	UniRef90_D2XPY3	Gp4-like protein	NA
UHGV-0069599_23	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0069599_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0069599_23	COG	COG2369	NA	NA
UHGV-0069599_25	PHROG	phrog_3754	NA	unknown function
UHGV-0069599_25	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0069599_26	UniRef90	UniRef90_A0A3E2U4I9	CTP synthase	NA
UHGV-0069599_26	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0069599_27	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0069599_27	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0069599_27	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0069599_28	PHROG	phrog_21718	NA	unknown function
UHGV-0069599_28	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0069599_29	PHROG	phrog_22984	NA	unknown function
UHGV-0069599_30	PHROG	phrog_16490	NA	unknown function
UHGV-0069599_30	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0069599_32	PHROG	phrog_20016	NA	unknown function
UHGV-0069599_32	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0069599_33	PHROG	phrog_28802	NA	unknown function
UHGV-0069599_33	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0069599_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0069599_34	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0069599_34	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0069599_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0069599_34	Structural annotation	PF06810	NA	NA
UHGV-0069599_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-0069599_35	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0069599_35	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0069599_35	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0069599_35	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0069599_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0069599_36	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0069599_37	PHROG	phrog_774	NA	unknown function
UHGV-0069599_37	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0069599_38	PHROG	phrog_1129	holin	lysis
UHGV-0069599_38	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0069599_38	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0069599_38	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0069599_38	Structural annotation	PF06946	NA	NA
UHGV-0069599_39	PHROG	phrog_3366	NA	unknown function
UHGV-0069599_39	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0069599_39	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0069599_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0069599_40	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0069599_40	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0069599_40	Structural annotation	PF11114	NA	NA
UHGV-0069599_41	PHROG	phrog_3266	tail completion	connector
UHGV-0069599_41	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0069599_41	Structural annotation	PF12691	NA	NA
UHGV-0069599_42	PHROG	phrog_3099	NA	unknown function
UHGV-0069599_42	eggNOG-mapper	1120746.CCNL01000014_gene2102	NA	NA
UHGV-0069599_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0069599_43	PHROG	phrog_11299	NA	unknown function
UHGV-0069599_43	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0069599_43	Structural annotation	PF10666	NA	NA
UHGV-0069599_44	PHROG	phrog_706	NA	unknown function
UHGV-0069599_44	UniRef90	UniRef90_UPI00156F1927	Gp15 family bacteriophage protein	NA
UHGV-0069599_44	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0069599_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0069599_44	Structural annotation	PF06854	NA	NA
UHGV-0069599_45	KOfam	K13582	podJ; localization factor PodJL	NA
UHGV-0069599_45	PHROG	phrog_37543	NA	unknown function
UHGV-0069599_45	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0069599_45	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0069599_45	COG	COG5412	Phage-related protein	NA
UHGV-0069599_45	Structural annotation	PF11172	NA	NA