UHGV-0069604

Genome information

Genome length 22,053 bps

CDS count 32

Completeness 50.47% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069604
vOTU ID	vOTU-022814
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_123747
BioSample	SAMEA2580061
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.7
Jumbo phage	No

Genome content
Genome length	22,053 bps
GC content	48.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	91.16%
Average CDS length	630.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069604_2	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069604_2	UniRef90	UniRef90_A0A373CTR1	Recombinase	NA
UHGV-0069604_2	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-0069604_2	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0069604_2	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0069604_2	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0069604_2	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0069604_3	PHROG	phrog_674	NA	unknown function
UHGV-0069604_3	UniRef90	UniRef90_A0A373CTW0	NA	NA
UHGV-0069604_3	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0069604_3	Pfam	PF07083	NA	DUF1351
UHGV-0069604_3	Structural annotation	PF07083	NA	NA
UHGV-0069604_4	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0069604_5	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069604_5	UniRef90	UniRef90_A0A373CW44	Phage recombination protein Bet	NA
UHGV-0069604_5	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0069604_5	Pfam	PF03837	RecT family	RecT
UHGV-0069604_5	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0069604_6	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069604_6	eggNOG-mapper	536233.CLO_0507	Phage recombination protein Bet	NA
UHGV-0069604_6	Pfam	PF03837	RecT family	RecT
UHGV-0069604_6	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0069604_7	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0069604_7	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-0069604_7	eggNOG-mapper	411483.FAEPRAA2165_01886	NA	NA
UHGV-0069604_8	PHROG	phrog_1029	NA	unknown function
UHGV-0069604_8	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-0069604_8	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-0069604_8	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0069604_9	PHROG	phrog_15768	NA	unknown function
UHGV-0069604_9	UniRef90	UniRef90_A0A373CU07	NA	NA
UHGV-0069604_9	eggNOG-mapper	445970.ALIPUT_02689	DNA-binding transcription factor activity	NA
UHGV-0069604_9	AcrCatalog	cluster_38323	NA	NA
UHGV-0069604_9	Pfam	PF19808	NA	DUF6291
UHGV-0069604_9	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0069604_9	Structural annotation	PF19808	NA	NA
UHGV-0069604_10	PHROG	phrog_15077	NA	unknown function
UHGV-0069604_10	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0069604_10	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0069604_10	Structural annotation	NF038070	NA	NA
UHGV-0069604_11	PHROG	phrog_10928	NA	unknown function
UHGV-0069604_11	eggNOG-mapper	861530.ALOZ01000074_gene963	NA	NA
UHGV-0069604_14	PHROG	phrog_6568	NA	unknown function
UHGV-0069604_14	eggNOG-mapper	428125.CLOLEP_01394	NA	NA
UHGV-0069604_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069604_15	UniRef90	UniRef90_A0A416GU18	RNA polymerase subunit sigma-70	NA
UHGV-0069604_15	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-0069604_15	Structural annotation	PF02996	NA	NA
UHGV-0069604_17	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0069604_17	UniRef90	UniRef90_A0A3D5L8R6	Terminase	NA
UHGV-0069604_17	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0069604_17	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0069604_17	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0069604_17	COG	COG5484	NA	NA
UHGV-0069604_17	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0069604_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069604_18	PHROG	phrog_10250	NA	unknown function
UHGV-0069604_18	UniRef90	UniRef90_A0A3D5L980	PBSX family phage terminase large subunit	NA
UHGV-0069604_18	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-0069604_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0069604_18	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0069604_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069604_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069604_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0069604_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0069604_19	UniRef90	UniRef90_A0A3D5L896	Phage portal protein	NA
UHGV-0069604_19	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-0069604_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069604_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0069604_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0069604_20	UniRef90	UniRef90_A0A3R6XFN9	Phage_Mu_F domain-containing protein	NA
UHGV-0069604_20	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-0069604_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0069604_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0069604_20	COG	COG2369	NA	NA
UHGV-0069604_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0069604_22	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0069604_22	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0069604_22	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0069604_23	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-0069604_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0069604_24	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-0069604_24	eggNOG-mapper	1567014.A0A0A7S0J5_9VIRU	Phage minor structural protein GP20	NA
UHGV-0069604_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0069604_24	Structural annotation	PF06810	NA	NA
UHGV-0069604_25	PHROG	phrog_247	major head protein	head and packaging
UHGV-0069604_25	UniRef90	UniRef90_A0A3R6WDT3	Coat protein	NA
UHGV-0069604_25	eggNOG-mapper	357809.Cphy_2964	NA	NA
UHGV-0069604_25	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0069604_26	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-0069604_27	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-0069604_27	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-0069604_29	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0069604_29	PHROG	phrog_95	integrase	integration and excision
UHGV-0069604_29	UniRef90	UniRef90_A7VXZ9	Recombinase	NA
UHGV-0069604_29	eggNOG-mapper	658086.HMPREF0994_05525	NA	NA
UHGV-0069604_29	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0069604_29	Pfam	PF07508	Recombinase	Recombinase
UHGV-0069604_29	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0069604_29	Pfam	PF14287	NA	DUF4368
UHGV-0069604_29	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0069604_29	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0069604_30	UniRef90	UniRef90_A0A454HKL9	Chorismate synthase	NA
UHGV-0069604_30	eggNOG-mapper	657322.FPR_04630	Transposon-encoded protein TnpW	NA
UHGV-0069604_30	Pfam	PF14202	Transposon-encoded protein TnpW	TnpW
UHGV-0069604_31	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0069604_31	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069604_31	UniRef90	UniRef90_A0A173YBU4	DNA replication protein dnaC	NA
UHGV-0069604_31	eggNOG-mapper	657322.FPR_04640	NA	NA
UHGV-0069604_31	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0069604_31	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0069604_31	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0069604_31	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0069604_32	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0069604_32	UniRef90	UniRef90_A0A2J4JQQ0	Replication protein	NA
UHGV-0069604_32	eggNOG-mapper	657322.FPR_04650	Phage replisome organizer N-terminal domain protein	NA
UHGV-0069604_32	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0069604_32	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0069604_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0069604_32	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA