UHGV-0069616

Genome information

Genome length 20,277 bps

CDS count 33

Completeness 100.00% (complete)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069616
vOTU ID	vOTU-045089
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_113524
BioSample	SAMEA2580287
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.76
Jumbo phage	No

Genome content
Genome length	20,277 bps
GC content	35.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	89.18%
Average CDS length	551.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069616_1	PHROG	phrog_17240	NA	unknown function
UHGV-0069616_1	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0069616_2	UniRef90	UniRef90_A0A7C6QTB7	Ubiquinone biosynthesis protein COQ7	NA
UHGV-0069616_2	eggNOG-mapper	1121335.Clst_0949	Ubiquinone biosynthesis protein COQ7	NA
UHGV-0069616_2	Pfam	PF03232	Ubiquinone biosynthesis protein COQ7	COQ7
UHGV-0069616_2	COG	COG1633	Rubrerythrin, includes spore coat protein YhjR	NA
UHGV-0069616_4	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0069616_4	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0069616_4	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0069616_5	PHROG	phrog_2038	upper collar connector	connector
UHGV-0069616_5	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0069616_5	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0069616_5	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0069616_5	Structural annotation	PF05352, TIGR01537, COG4695	NA	NA
UHGV-0069616_6	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0069616_6	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0069616_6	UniRef90	UniRef90_A0A7C1UDB6	M23 family metallopeptidase	NA
UHGV-0069616_6	eggNOG-mapper	931626.Awo_c11530	sporulation resulting in formation of a cellular spore	NA
UHGV-0069616_6	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0069616_6	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0069616_7	PHROG	phrog_11037	NA	unknown function
UHGV-0069616_7	UniRef90	UniRef90_UPI001A9D4312	phage tail tip lysozyme	NA
UHGV-0069616_7	eggNOG-mapper	1423806.JCM15457_461	NLP P60 protein	NA
UHGV-0069616_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0069616_7	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0069616_8	PHROG	phrog_2248	tail protein	tail
UHGV-0069616_8	UniRef90	UniRef90_P04331	Tail knob protein gp9	NA
UHGV-0069616_8	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0069616_8	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0069616_8	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0069616_8	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0069616_9	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0069616_9	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0069616_9	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0069616_9	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0069616_9	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0069616_11	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0069616_11	PHROG	phrog_894	endolysin	lysis
UHGV-0069616_11	UniRef90	UniRef90_A0A1E7S2S4	Peptidase M15	NA
UHGV-0069616_11	eggNOG-mapper	903814.ELI_0060	Peptidase M15	NA
UHGV-0069616_11	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0069616_11	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0069616_11	COG	COG3108	NA	NA
UHGV-0069616_12	PHROG	phrog_1129	holin	lysis
UHGV-0069616_12	UniRef90	UniRef90_A0A810PUU2	Holin	NA
UHGV-0069616_12	eggNOG-mapper	1449050.JNLE01000003_gene3454	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0069616_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0069616_12	Structural annotation	PF06946	NA	NA
UHGV-0069616_18	PHROG	phrog_2150	terminase	head and packaging
UHGV-0069616_18	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0069616_18	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0069616_18	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0069616_18	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069616_20	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0069616_20	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0069616_20	UniRef90	UniRef90_A0A1W7M4V8	DNA-directed DNA polymerase	NA
UHGV-0069616_20	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0069616_20	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0069616_20	Structural annotation	PF03175, MF_04055	NA	NA
UHGV-0069616_21	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0069616_21	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0069616_21	UniRef90	UniRef90_A0A843HI09	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0069616_21	eggNOG-mapper	12345.Q96206_BPGA1	nucleotide binding	NA
UHGV-0069616_21	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0069616_21	Structural annotation	PF03175, MF_01899, TIGR01388	NA	NA
UHGV-0069616_22	PHROG	phrog_6358	DNA terminal protein	DNA, RNA and nucleotide metabolism
UHGV-0069616_22	Structural annotation	PF05435	NA	NA
UHGV-0069616_23	PHROG	phrog_10365	late transcriptional activator	transcription regulation
UHGV-0069616_23	Pfam	PF05464	Phi-29-like late genes activator (early protein GP4)	Phi-29_GP4
UHGV-0069616_23	Structural annotation	PF05464	NA	NA
UHGV-0069616_24	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069616_24	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0069616_24	Structural annotation	PF17427	NA	NA
UHGV-0069616_25	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069616_25	Structural annotation	PF17548	NA	NA
UHGV-0069616_32	PHROG	phrog_4264	NA	unknown function
UHGV-0069616_32	eggNOG-mapper	1560313.A0A0D3MSR8_9CAUD	NA	NA