UHGV-0069635

Genome information

Genome length 12,485 bps

CDS count 21

Completeness 94.54% (high-quality)

geNomad score 0.9632

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069635
vOTU ID	vOTU-009376
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_107586
BioSample	SAMEA2580029
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9632
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.73
Jumbo phage	No

Genome content
Genome length	12,485 bps
GC content	34.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	84.75%
Average CDS length	510.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069635_1	KOfam	K02049	ABC.SN.A; NitT/TauT family transport system ATP-binding protein	NA
UHGV-0069635_1	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0069635_1	UniRef90	UniRef90_A0A062WPX2	ABC transporter ATP-binding protein	NA
UHGV-0069635_1	eggNOG-mapper	563038.HMPREF0851_01742	abc transporter atp-binding protein	NA
UHGV-0069635_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0069635_1	COG	COG1116	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	NA
UHGV-0069635_1	Structural annotation	PF00005, MF_00848, TIGR02211, COG1116	NA	NA
UHGV-0069635_2	KOfam	K14059	int; integrase	NA
UHGV-0069635_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0069635_2	UniRef90	UniRef90_A0A4D5ZKL0	Integrase	NA
UHGV-0069635_2	eggNOG-mapper	1008453.HMPREF9957_0726	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0069635_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0069635_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069635_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069635_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0069635_3	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0069635_3	UniRef90	UniRef90_A0A139Q4R3	Abortive infection bacteriophage resistance protein	NA
UHGV-0069635_3	eggNOG-mapper	1282664.H354_04690	Abi-like protein	NA
UHGV-0069635_3	PADLOC	AbiD	AbiD	Abi
UHGV-0069635_3	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0069635_3	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0069635_3	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0069635_4	PHROG	phrog_22683	NA	unknown function
UHGV-0069635_4	UniRef90	UniRef90_A0A133RVS5	NA	NA
UHGV-0069635_4	eggNOG-mapper	1282664.H354_04685	NA	NA
UHGV-0069635_4	AcrCatalog	cluster_3962	NA	NA
UHGV-0069635_4	Pfam	PF13783	NA	DUF4177
UHGV-0069635_4	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0069635_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0069635_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069635_5	UniRef90	UniRef90_I0SER3	DNA-binding helix-turn-helix protein	NA
UHGV-0069635_5	eggNOG-mapper	1035187.HMPREF9959_1778	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0069635_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069635_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069635_6	PHROG	phrog_11187	transcriptional regulator	transcription regulation
UHGV-0069635_6	UniRef90	UniRef90_A0A3R9K6W4	HTH cro/C1-type domain-containing protein	NA
UHGV-0069635_6	eggNOG-mapper	1035187.HMPREF9959_1777	NA	NA
UHGV-0069635_6	Structural annotation	PF13560, NF007271, COG1476	NA	NA
UHGV-0069635_7	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0069635_7	UniRef90	UniRef90_A0A0T8SEM8	NA	NA
UHGV-0069635_7	eggNOG-mapper	585203.SMSK564_1591	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0069635_7	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0069635_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0069635_7	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0069635_8	UniRef90	UniRef90_A0A064C2J8	NA	NA
UHGV-0069635_8	eggNOG-mapper	1035187.HMPREF9959_1775	NA	NA
UHGV-0069635_10	PHROG	phrog_20097	NA	unknown function
UHGV-0069635_10	UniRef90	UniRef90_A0A4D5ZJJ9	Glycerate kinase	NA
UHGV-0069635_10	eggNOG-mapper	1008453.HMPREF9957_0717	DnaD domain protein	NA
UHGV-0069635_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0069635_11	PHROG	phrog_11572	NA	unknown function
UHGV-0069635_11	eggNOG-mapper	768726.HMPREF9178_1173	NA	NA
UHGV-0069635_12	PHROG	phrog_10458	NA	unknown function
UHGV-0069635_12	UniRef90	UniRef90_A0A0U0KCF5	NA	NA
UHGV-0069635_12	eggNOG-mapper	1035187.HMPREF9959_1772	NA	NA
UHGV-0069635_12	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0069635_13	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0069635_13	PHROG	phrog_1163	NA	unknown function
UHGV-0069635_13	UniRef90	UniRef90_UPI0012DBEBA8	conserved phage C-terminal domain-containing protein	NA
UHGV-0069635_13	eggNOG-mapper	1008453.HMPREF9957_0715	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0069635_13	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0069635_13	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0069635_13	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0069635_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0069635_13	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG5529	NA	NA
UHGV-0069635_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0069635_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069635_14	UniRef90	UniRef90_A0A0F2D744	AAA domain-containing protein	NA
UHGV-0069635_14	eggNOG-mapper	585203.SMSK564_1586	RNA helicase	NA
UHGV-0069635_14	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0069635_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0069635_14	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0069635_15	eggNOG-mapper	1008453.HMPREF9957_0713	NA	NA
UHGV-0069635_16	eggNOG-mapper	585203.SMSK564_1585	NA	NA
UHGV-0069635_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0069635_17	UniRef90	UniRef90_A0A4V0EWD0	Capsid protein	NA
UHGV-0069635_17	eggNOG-mapper	1282664.H354_04630	capsid protein	NA
UHGV-0069635_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0069635_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0069635_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069635_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0069635_18	UniRef90	UniRef90_F9HPW5	Conserved domain protein	NA
UHGV-0069635_18	eggNOG-mapper	585203.SMSK564_1582	NA	NA
UHGV-0069635_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069635_19	UniRef90	UniRef90_UPI00077D2CF3	NA	NA
UHGV-0069635_19	eggNOG-mapper	1035187.HMPREF9959_0037	NA	NA
UHGV-0069635_20	PHROG	phrog_1281	NA	unknown function
UHGV-0069635_20	UniRef90	UniRef90_A0A0F2DY73	NA	NA
UHGV-0069635_20	eggNOG-mapper	411459.RUMOBE_01368	Phage-associated protein	NA
UHGV-0069635_20	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0069635_20	COG	COG3600	NA	NA
UHGV-0069635_20	Structural annotation	PF13274, COG3600	NA	NA