UHGV-0069724

Genome information

Genome length 23,796 bps

CDS count 26

Completeness 57.36% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069724
vOTU ID	vOTU-041354
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120399
BioSample	SAMEA2579927
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.34
Jumbo phage	No

Genome content
Genome length	23,796 bps
GC content	62.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	96.27%
Average CDS length	885.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069724_1	KOfam	K03686	dnaJ; molecular chaperone DnaJ	NA
UHGV-0069724_1	PHROG	phrog_14336	NA	unknown function
UHGV-0069724_1	UniRef90	UniRef90_Q8G6C6	Chaperone protein DnaJ	NA
UHGV-0069724_1	eggNOG-mapper	216816.GS08_05510	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	NA
UHGV-0069724_1	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0069724_1	Pfam	PF01556	DnaJ C terminal domain	DnaJ_C
UHGV-0069724_1	NCBIFam	NF008035.0	molecular chaperone DnaJ	NA
UHGV-0069724_1	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0069724_1	HAMAP	MF_01152	Chaperone protein DnaJ [dnaJ]	NA
UHGV-0069724_1	Structural annotation	PF01556, PF00226, MF_01152, NF010882, COG0484	NA	NA
UHGV-0069724_3	KOfam	K07403	nfeD; membrane-bound serine protease (ClpP class)	NA
UHGV-0069724_3	PHROG	phrog_11747	NA	unknown function
UHGV-0069724_3	UniRef90	UniRef90_A0A0M4MM37	ClpP class periplasmic serine protease	NA
UHGV-0069724_3	eggNOG-mapper	404380.Gbem_3471	Serine dehydrogenase proteinase	NA
UHGV-0069724_3	Pfam	PF01972	Serine dehydrogenase proteinase	SDH_sah
UHGV-0069724_3	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0069724_3	Structural annotation	PF01972, MF_00444, TIGR00706, COG0740	NA	NA
UHGV-0069724_4	PHROG	phrog_297	holin	lysis
UHGV-0069724_4	UniRef90	UniRef90_A0A0M5L5E6	CHAP domain protein	NA
UHGV-0069724_4	eggNOG-mapper	1341695.BBOMB_1025	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069724_4	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0069724_4	Structural annotation	PF08460, NF033202, COG3942	NA	NA
UHGV-0069724_5	PHROG	phrog_263	holin	lysis
UHGV-0069724_5	UniRef90	UniRef90_A0A0M3T8I8	Phage lysis protein	NA
UHGV-0069724_5	eggNOG-mapper	702459.BBPR_0930	SPP1 phage holin	NA
UHGV-0069724_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0069724_7	eggNOG-mapper	566552.BIFCAT_00857	NA	NA
UHGV-0069724_8	KOfam	K16461	CEP135, CEP4; centrosomal protein CEP135	NA
UHGV-0069724_8	PHROG	phrog_21973	tail protein	tail
UHGV-0069724_8	eggNOG-mapper	566552.BIFCAT_00858	nuclear chromosome segregation	NA
UHGV-0069724_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0069724_9	PHROG	phrog_1885	minor tail protein	tail
UHGV-0069724_9	eggNOG-mapper	1435051.BMOU_0765	NA	NA
UHGV-0069724_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0069724_10	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0069724_10	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0069724_10	eggNOG-mapper	1692.BMAGN_1457	NA	NA
UHGV-0069724_10	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0069724_11	PHROG	phrog_5577	minor tail protein	tail
UHGV-0069724_11	UniRef90	UniRef90_A0A2K9BD10	NA	NA
UHGV-0069724_11	eggNOG-mapper	1394176.AWUO01000014_gene652	NA	NA
UHGV-0069724_11	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0069724_12	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0069724_12	UniRef90	UniRef90_S3AFM5	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0069724_12	eggNOG-mapper	398513.BBNG_00858	Phage-related minor tail protein	NA
UHGV-0069724_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0069724_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0069724_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0069724_12	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0069724_13	UniRef90	UniRef90_A0A0A6VLW6	Terminase	NA
UHGV-0069724_13	eggNOG-mapper	398513.BBNG_00857	NA	NA
UHGV-0069724_14	UniRef90	UniRef90_A0A1S2VW25	DNA primase	NA
UHGV-0069724_14	eggNOG-mapper	702459.BBPR_0921	NA	NA
UHGV-0069724_14	Structural annotation	PF08890	NA	NA
UHGV-0069724_15	PHROG	phrog_2491	major tail protein	tail
UHGV-0069724_15	UniRef90	UniRef90_A0A0M3T8I6	Gp28	NA
UHGV-0069724_15	eggNOG-mapper	702459.BBPR_0920	NA	NA
UHGV-0069724_15	Structural annotation	PF16463, TIGR01611, COG5437	NA	NA
UHGV-0069724_16	UniRef90	UniRef90_A0A0M0VIY2	Transcriptional regulator	NA
UHGV-0069724_16	eggNOG-mapper	398513.BBNG_00854	NA	NA
UHGV-0069724_16	Structural annotation	PF06141	NA	NA
UHGV-0069724_17	PHROG	phrog_19109	NA	unknown function
UHGV-0069724_17	eggNOG-mapper	398513.BBNG_00853	NA	NA
UHGV-0069724_17	Structural annotation	TIGR01725	NA	NA
UHGV-0069724_18	PHROG	phrog_13779	NA	unknown function
UHGV-0069724_18	UniRef90	UniRef90_UPI000CA38CA7	NA	NA
UHGV-0069724_18	eggNOG-mapper	398513.BBNG_00852	NA	NA
UHGV-0069724_18	Pfam	PF19586	NA	DUF6093
UHGV-0069724_18	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0069724_19	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0069724_19	UniRef90	UniRef90_UPI001076B1E5	Gp19/Gp15/Gp42 family protein	NA
UHGV-0069724_19	eggNOG-mapper	888439.HMPREF9240_01927	NA	NA
UHGV-0069724_19	Structural annotation	PF09355	NA	NA
UHGV-0069724_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0069724_21	UniRef90	UniRef90_B7GQX6	Phage major capsid protein, HK97	NA
UHGV-0069724_21	eggNOG-mapper	1273125.Rrhod_0602	Phage capsid family	NA
UHGV-0069724_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0069724_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0069724_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069724_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0069724_22	eggNOG-mapper	1381751.JAJB01000050_gene144	NA	NA
UHGV-0069724_23	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0069724_23	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0069724_23	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0069724_24	PHROG	phrog_104	portal protein	head and packaging
UHGV-0069724_24	UniRef90	UniRef90_A0A087BHJ9	Phage portal protein gp6-like protein	NA
UHGV-0069724_24	eggNOG-mapper	1273125.Rrhod_0599	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0069724_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069724_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0069724_25	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0069724_25	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0069724_25	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0069724_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0069724_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0069724_26	PHROG	phrog_226	minor tail protein	tail
UHGV-0069724_26	eggNOG-mapper	1437603.BMON_0142	NA	NA