UHGV-0069725

Genome information

vOTU vOTU-020374

Genome length 26,524 bps

CDS count 41

Completeness 59.91% (medium-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069725
vOTU ID	vOTU-020374
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120414
BioSample	SAMEA2579991
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.93
Jumbo phage	No

Genome content
Genome length	26,524 bps
GC content	48.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	87.11%
Average CDS length	564.88 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069725_1	PHROG	phrog_158	major tail protein	tail
UHGV-0069725_1	UniRef90	UniRef90_E6BSD0	Ig-like domain-containing protein	NA
UHGV-0069725_1	eggNOG-mapper	1440052.EAKF1_ch0456c	Immunoglobulin	NA
UHGV-0069725_1	Pfam	PF13895	Immunoglobulin domain	Ig_2
UHGV-0069725_1	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-0069725_2	PHROG	phrog_347	tail terminator	connector
UHGV-0069725_2	UniRef90	UniRef90_D3GXN5	Putative prophage protein	NA
UHGV-0069725_2	eggNOG-mapper	1440052.EAKF1_ch0457c	NA	NA
UHGV-0069725_2	Pfam	PF11367	NA	DUF3168
UHGV-0069725_2	Structural annotation	PF11367	NA	NA
UHGV-0069725_3	PHROG	phrog_23409	NA	unknown function
UHGV-0069725_3	UniRef90	UniRef90_A0A0A6SE05	HK97 gp10 family phage protein	NA
UHGV-0069725_3	eggNOG-mapper	1440052.EAKF1_ch0458c	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0069725_3	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0069725_3	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0069725_3	Structural annotation	TIGR01725	NA	NA
UHGV-0069725_4	PHROG	phrog_25	head closure Hc1	connector
UHGV-0069725_4	UniRef90	UniRef90_A0A0G3JU98	Head-tail adaptor protein	NA
UHGV-0069725_4	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-0069725_4	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0069725_4	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0069725_4	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0069725_4	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0069725_5	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0069725_5	UniRef90	UniRef90_A0A0G3JSG3	Phage gp6-like head-tail connector protein	NA
UHGV-0069725_5	eggNOG-mapper	1332071.L581_3141	Phage gp6-like head-tail connector protein	NA
UHGV-0069725_5	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0069725_5	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0069725_5	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0069725_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0069725_6	UniRef90	UniRef90_A0A376VIQ7	Prophage major capsid protein	NA
UHGV-0069725_6	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0069725_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0069725_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0069725_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069725_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0069725_7	KOfam	K06904	NA	NA
UHGV-0069725_7	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0069725_7	UniRef90	UniRef90_E6BSD6	Phage prohead protease, HK97 family	NA
UHGV-0069725_7	eggNOG-mapper	1082705.JIBP01000010_gene168	Prohead protease	NA
UHGV-0069725_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0069725_7	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0069725_7	COG	COG3740	Phage head maturation protease	NA
UHGV-0069725_7	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0069725_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-0069725_8	UniRef90	UniRef90_A0A0L7ACU7	Phage portal protein	NA
UHGV-0069725_8	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0069725_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0069725_8	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0069725_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0069725_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0069725_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0069725_9	UniRef90	UniRef90_A0A4C4IQY6	Phage terminase large subunit	NA
UHGV-0069725_9	eggNOG-mapper	1440052.EAKF1_ch0466c	Phage Terminase	NA
UHGV-0069725_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0069725_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0069725_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0069725_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0069725_10	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0069725_10	UniRef90	UniRef90_A0A0J2B4L5	Phage terminase small subunit P27 family	NA
UHGV-0069725_10	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0069725_10	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0069725_10	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0069725_10	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0069725_11	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0069725_11	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069725_11	UniRef90	UniRef90_A0A0L6XVE5	HNH endonuclease	NA
UHGV-0069725_11	eggNOG-mapper	103807.Q8W633_9CAUD	endonuclease activity	NA
UHGV-0069725_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0069725_11	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0069725_12	KOfam	K09161	NA	NA
UHGV-0069725_12	PHROG	phrog_6084	NA	unknown function
UHGV-0069725_12	UniRef90	UniRef90_UPI000E2AA7F0	YfbU family protein	NA
UHGV-0069725_12	eggNOG-mapper	202955.BBND01000048_gene1895	YfbU domain	NA
UHGV-0069725_12	Pfam	PF03887	YfbU domain	YfbU
UHGV-0069725_12	COG	COG3013	NA	NA
UHGV-0069725_12	Structural annotation	PF03887, MF_00762, NF003936, COG3013	NA	NA
UHGV-0069725_13	PHROG	phrog_5415	NA	unknown function
UHGV-0069725_14	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0069725_14	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0069725_14	UniRef90	UniRef90_B1LPZ9	Bacteriophage lysis protein	NA
UHGV-0069725_14	eggNOG-mapper	414970.A5LH84_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-0069725_14	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0069725_14	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0069725_14	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0069725_15	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0069725_15	PHROG	phrog_7	endolysin	lysis
UHGV-0069725_15	UniRef90	UniRef90_A0A066T2U5	Lysozyme	NA
UHGV-0069725_15	eggNOG-mapper	199310.c1436	Corresponds to locus_tag	NA
UHGV-0069725_15	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0069725_15	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0069725_15	HAMAP	MF_04110	Endolysin	NA
UHGV-0069725_15	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-0069725_16	PHROG	phrog_406	NA	unknown function
UHGV-0069725_16	UniRef90	UniRef90_A0A862ZIW4	NA	NA
UHGV-0069725_16	eggNOG-mapper	469008.B21_01344	NA	NA
UHGV-0069725_16	Pfam	PF07041	NA	DUF1327
UHGV-0069725_16	Structural annotation	PF07041	NA	NA
UHGV-0069725_17	PHROG	phrog_9876	holin	lysis
UHGV-0069725_17	UniRef90	UniRef90_A0A066SYA7	Class II holin family protein	NA
UHGV-0069725_17	eggNOG-mapper	1440052.EAKF1_ch0472c	Bacteriophage P21 holin S	NA
UHGV-0069725_17	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0069725_17	Structural annotation	PF04971	NA	NA
UHGV-0069725_18	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0069725_18	PHROG	phrog_6952	DNA methyltransferase	other
UHGV-0069725_18	UniRef90	UniRef90_A0A376L813	DNA methylase	NA
UHGV-0069725_18	eggNOG-mapper	1115653.S5MDR0_9CAUD	N-methyltransferase activity	NA
UHGV-0069725_18	PADLOC	MTase_II_00051	Type II methyltransferase	RM
UHGV-0069725_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0069725_19	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0069725_19	UniRef90	UniRef90_G4U4M7	Antitermination protein Q	NA
UHGV-0069725_19	eggNOG-mapper	1115653.S5M7R9_9CAUD	negative regulation of DNA-dependent transcription, termination	NA
UHGV-0069725_19	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0069725_19	Structural annotation	PF06530, MF_00245, TIGR02999, COG2739	NA	NA
UHGV-0069725_20	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069725_20	UniRef90	UniRef90_Q1R2A8	HNHc domain-containing protein	NA
UHGV-0069725_20	eggNOG-mapper	1147152.K7PJR3_9CAUD	NA	NA
UHGV-0069725_20	Pfam	PF06147	NA	DUF968
UHGV-0069725_20	Structural annotation	PF06147	NA	NA
UHGV-0069725_21	PHROG	phrog_8274	NA	unknown function
UHGV-0069725_21	UniRef90	UniRef90_A0A2J1D6E9	DNA-binding protein	NA
UHGV-0069725_21	eggNOG-mapper	66284.S5FM84_BPSF2	KilA-N domain	NA
UHGV-0069725_21	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0069725_21	Structural annotation	PF04383, PF03374	NA	NA
UHGV-0069725_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0069725_22	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0069725_22	UniRef90	UniRef90_A0A024L4U8	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0069725_22	eggNOG-mapper	754331.AEME01000001_gene3121	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0069725_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0069725_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069725_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0069725_23	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0069725_23	PHROG	phrog_362	transcriptional repressor	transcription regulation
UHGV-0069725_23	UniRef90	UniRef90_A0A0A0G8T5	LexA family transcriptional regulator	NA
UHGV-0069725_23	eggNOG-mapper	754331.AEME01000001_gene4310	LexA DNA binding domain	NA
UHGV-0069725_23	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0069725_23	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0069725_23	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0069725_24	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0069725_24	UniRef90	UniRef90_A0A3T7ZK63	PerC family transcriptional regulator	NA
UHGV-0069725_24	eggNOG-mapper	199310.c3191	PerC transcriptional activator	NA
UHGV-0069725_24	Pfam	PF06069	PerC transcriptional activator	PerC
UHGV-0069725_24	Structural annotation	PF07106, PF06069, MF_01909, NF012168, NF033650, COG5625	NA	NA
UHGV-0069725_25	PHROG	phrog_391	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0069725_25	UniRef90	UniRef90_A0A0K3SXV7	Ybl78	NA
UHGV-0069725_25	eggNOG-mapper	1440052.EAKF1_ch0484c	DnaD domain protein	NA
UHGV-0069725_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0069725_25	Structural annotation	PF13463, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0069725_26	PHROG	phrog_1170	NA	unknown function
UHGV-0069725_26	UniRef90	UniRef90_W9B7M2	YmfM protein	NA
UHGV-0069725_27	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0069725_27	UniRef90	UniRef90_A0A0C2B1B9	DNA-binding protein	NA
UHGV-0069725_27	eggNOG-mapper	1440052.EAKF1_ch1778c	NA	NA
UHGV-0069725_27	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0069725_27	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0069725_27	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0069725_28	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-0069725_28	UniRef90	UniRef90_W8T6T1	Cell division protein	NA
UHGV-0069725_28	eggNOG-mapper	199310.c3196	DNA-binding transcriptional regulator Cro	NA
UHGV-0069725_28	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-0069725_28	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0069725_29	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0069725_29	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0069725_29	UniRef90	UniRef90_A0A024L3W0	Helix-turn-helix domain-containing protein	NA
UHGV-0069725_29	eggNOG-mapper	199310.c3197	Peptidase S24-like	NA
UHGV-0069725_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069725_29	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0069725_29	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0069725_29	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0069725_30	PHROG	phrog_6315	NA	unknown function
UHGV-0069725_30	eggNOG-mapper	1443113.LC20_01734	NA	NA
UHGV-0069725_30	Structural annotation	PF18186, NF033632	NA	NA
UHGV-0069725_31	PHROG	phrog_204	NA	unknown function
UHGV-0069725_31	UniRef90	UniRef90_A0A024L4V5	CPS-53 (KpLE1) prophage protein	NA
UHGV-0069725_31	eggNOG-mapper	1440052.EAKF1_ch1463	NA	NA
UHGV-0069725_31	Structural annotation	PF14534	NA	NA
UHGV-0069725_32	PHROG	phrog_210	NA	unknown function
UHGV-0069725_32	UniRef90	UniRef90_UPI00101EB4B9	NA	NA
UHGV-0069725_32	eggNOG-mapper	316407.85675374	NA	NA
UHGV-0069725_32	Pfam	PF10065	NA	DUF2303
UHGV-0069725_32	COG	COG5532	NA	NA
UHGV-0069725_32	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0069725_33	KOfam	K06952	yfdR; 5'-nucleotidase [EC:3.1.3.89]	NA
UHGV-0069725_33	PHROG	phrog_318	deoxyribonucleoside 5' monophosphate phosphatase	other
UHGV-0069725_33	UniRef90	UniRef90_A0A827Z638	5'-deoxynucleotidase	NA
UHGV-0069725_33	eggNOG-mapper	316407.85675375	5'-deoxynucleotidase activity	NA
UHGV-0069725_33	COG	COG1896	5'-deoxynucleotidase YfbR and related HD superfamily hydrolases	NA
UHGV-0069725_33	Structural annotation	PF12917, MF_01100, NF003009, COG1896	NA	NA
UHGV-0069725_34	PHROG	phrog_583	NA	unknown function
UHGV-0069725_34	UniRef90	UniRef90_A0A2I6JKQ6	CPS-53 (KpLE1) prophage protein	NA
UHGV-0069725_34	eggNOG-mapper	1147152.K7PH61_9CAUD	NA	NA
UHGV-0069725_34	Pfam	PF04448	NA	DUF551
UHGV-0069725_35	PHROG	phrog_1226	NA	unknown function
UHGV-0069725_35	UniRef90	UniRef90_UPI0003BEF120	YdaS family helix-turn-helix protein	NA
UHGV-0069725_35	eggNOG-mapper	1115653.S5MDS1_9CAUD	NA	NA
UHGV-0069725_36	PHROG	phrog_1344	NA	unknown function
UHGV-0069725_36	eggNOG-mapper	1115653.S5MQM0_9CAUD	NA	NA
UHGV-0069725_37	PHROG	phrog_1667	NA	unknown function
UHGV-0069725_37	UniRef90	UniRef90_A0A0F3USU5	Ead/Ea22-like family protein	NA
UHGV-0069725_37	eggNOG-mapper	155864.EDL933_1715	NA	NA
UHGV-0069725_37	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-0069725_38	PHROG	phrog_60	NA	unknown function
UHGV-0069725_38	UniRef90	UniRef90_A0A8F2QDU1	NA	NA
UHGV-0069725_38	eggNOG-mapper	1440052.EAKF1_ch1467	NA	NA
UHGV-0069725_38	Pfam	PF04448	NA	DUF551
UHGV-0069725_38	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0069725_39	PHROG	phrog_1553	excisionase	integration and excision
UHGV-0069725_39	UniRef90	UniRef90_A0A5P2EJJ1	DNA-binding protein	NA
UHGV-0069725_40	PHROG	phrog_7779	NA	unknown function
UHGV-0069725_40	eggNOG-mapper	1219065.VPR01S_34_00050	NA	NA
UHGV-0069725_41	KOfam	K14059	int; integrase	NA
UHGV-0069725_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0069725_41	UniRef90	UniRef90_A0A0U5EEU8	Integrase	NA
UHGV-0069725_41	eggNOG-mapper	414970.A5LH57_9CAUD	Pfam:Arm-DNA-bind_3	NA
UHGV-0069725_41	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0069725_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069725_41	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG0582	NA	NA