UHGV-0069741

Genome information

Genome length 36,066 bps

CDS count 75

Completeness 100.00% (complete)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069741
vOTU ID	vOTU-006382
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_131308
BioSample	SAMEA2737728
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.01
Jumbo phage	No

Genome content
Genome length	36,066 bps
GC content	47.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	92.32%
Average CDS length	448.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069741_2	PHROG	phrog_18725	NA	unknown function
UHGV-0069741_2	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0069741_3	PHROG	phrog_13879	NA	unknown function
UHGV-0069741_3	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0069741_3	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0069741_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0069741_5	PHROG	phrog_23464	NA	unknown function
UHGV-0069741_5	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0069741_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0069741_6	Structural annotation	PF11836	NA	NA
UHGV-0069741_7	PHROG	phrog_88	major tail protein	tail
UHGV-0069741_7	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0069741_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0069741_7	COG	COG5492	NA	NA
UHGV-0069741_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0069741_8	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0069741_8	Structural annotation	TIGR01725	NA	NA
UHGV-0069741_9	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0069741_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0069741_10	PHROG	phrog_19734	NA	unknown function
UHGV-0069741_10	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0069741_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0069741_11	PHROG	phrog_749	NA	unknown function
UHGV-0069741_11	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0069741_11	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0069741_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0069741_12	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-0069741_12	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0069741_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0069741_12	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0069741_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0069741_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069741_12	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0069741_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0069741_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0069741_13	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0069741_13	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0069741_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0069741_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0069741_13	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0069741_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0069741_14	UniRef90	UniRef90_A0A328UFT7	Phage portal protein	NA
UHGV-0069741_14	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0069741_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0069741_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0069741_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0069741_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0069741_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0069741_15	UniRef90	UniRef90_A0A6A8VI40	Terminase large subunit	NA
UHGV-0069741_15	eggNOG-mapper	349161.Dred_2607	Phage terminase-like protein large subunit	NA
UHGV-0069741_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0069741_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0069741_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0069741_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0069741_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0069741_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069741_16	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0069741_16	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0069741_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0069741_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0069741_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069741_17	UniRef90	UniRef90_E4L8B7	Sigma70_r4 domain-containing protein	NA
UHGV-0069741_17	eggNOG-mapper	1410624.JNKK01000017_gene1964	sigma factor activity	NA
UHGV-0069741_17	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0069741_17	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0069741_19	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0069741_19	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0069741_19	UniRef90	UniRef90_UPI000E09A8FA	MT-A70 family methyltransferase	NA
UHGV-0069741_19	eggNOG-mapper	1280676.AUJO01000007_gene2082	MT-A70	NA
UHGV-0069741_19	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0069741_19	Pfam	PF05063	MT-A70	MT-A70
UHGV-0069741_19	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0069741_19	Structural annotation	PF05063, NF010253, COG4725	NA	NA
UHGV-0069741_26	PHROG	phrog_7704	NA	unknown function
UHGV-0069741_26	UniRef90	UniRef90_UPI00119E3978	NA	NA
UHGV-0069741_26	Pfam	PF04448	NA	DUF551
UHGV-0069741_26	Structural annotation	NF041588	NA	NA
UHGV-0069741_29	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0069741_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069741_31	PHROG	phrog_25385	NA	unknown function
UHGV-0069741_31	eggNOG-mapper	748224.HMPREF9436_03077	NA	NA
UHGV-0069741_31	Structural annotation	PF04012	NA	NA
UHGV-0069741_33	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0069741_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0069741_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069741_34	UniRef90	UniRef90_C7RH80	Endodeoxyribonuclease RusA	NA
UHGV-0069741_34	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0069741_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0069741_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069741_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0069741_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0069741_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069741_35	UniRef90	UniRef90_A0A1W1V2Y9	Single-stranded DNA-binding protein	NA
UHGV-0069741_35	eggNOG-mapper	1449126.JQKL01000020_gene3366	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0069741_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0069741_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0069741_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0069741_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0069741_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0069741_37	PHROG	phrog_15768	NA	unknown function
UHGV-0069741_37	UniRef90	UniRef90_R6RVQ1	Chromosome segregation ATPases	NA
UHGV-0069741_37	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0069741_37	AcrCatalog	cluster_14472	NA	NA
UHGV-0069741_37	Pfam	PF19808	NA	DUF6291
UHGV-0069741_37	Structural annotation	PF19808	NA	NA
UHGV-0069741_38	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069741_38	UniRef90	UniRef90_UPI001655FE04	phage recombination protein Bet	NA
UHGV-0069741_38	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0069741_38	Pfam	PF03837	RecT family	RecT
UHGV-0069741_38	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0069741_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0069741_38	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0069741_39	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0069741_39	UniRef90	UniRef90_UPI001ADD97E1	siphovirus Gp157 family protein	NA
UHGV-0069741_39	eggNOG-mapper	1449050.JNLE01000005_gene3949	Siphovirus Gp157	NA
UHGV-0069741_39	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0069741_39	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0069741_40	PHROG	phrog_5070	NA	unknown function
UHGV-0069741_40	UniRef90	UniRef90_A0A3A9AGI5	Polymer-forming cytoskeletal protein	NA
UHGV-0069741_40	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0069741_40	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0069741_40	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0069741_40	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-0069741_46	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0069741_46	PHROG	phrog_938	endolysin	lysis
UHGV-0069741_46	UniRef90	UniRef90_R6DPB3	Putative Cell wall hydrolase	NA
UHGV-0069741_46	eggNOG-mapper	1274524.BSONL12_12176	COG3773 Cell wall hydrolyses involved in spore germination	NA
UHGV-0069741_46	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0069741_46	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0069741_46	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0069741_52	UniRef90	UniRef90_UPI001CF844D1	NA	NA
UHGV-0069741_52	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-0069741_52	Pfam	PF05339	NA	DUF739
UHGV-0069741_52	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0069741_52	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0069741_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069741_53	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0069741_53	UniRef90	UniRef90_A0A374REM2	XRE family transcriptional regulator	NA
UHGV-0069741_53	eggNOG-mapper	190304.FN2065	Helix-turn-helix XRE-family like proteins	NA
UHGV-0069741_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069741_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069741_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0069741_56	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0069741_56	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0069741_57	KOfam	K14059	int; integrase	NA
UHGV-0069741_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0069741_57	UniRef90	UniRef90_A0A2I7SND3	Site-specific integrase	NA
UHGV-0069741_57	eggNOG-mapper	748727.CLJU_c32470	Belongs to the 'phage' integrase family	NA
UHGV-0069741_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0069741_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069741_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069741_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0069741_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0069741_62	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0069741_63	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0069741_63	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0069741_63	UniRef90	UniRef90_A0A2V2EQ01	Peptidase_M23 domain-containing protein	NA
UHGV-0069741_63	eggNOG-mapper	986075.CathTA2_2098	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0069741_63	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0069741_63	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0069741_63	Structural annotation	PF01551, MF_00664, NF040883, COG0739	NA	NA
UHGV-0069741_66	PHROG	phrog_297	holin	lysis
UHGV-0069741_66	UniRef90	UniRef90_N1ZDK1	Phage phi LC3 family holin	NA
UHGV-0069741_66	eggNOG-mapper	97138.C820_02010	Bacteriophage holin	NA
UHGV-0069741_66	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0069741_66	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0069741_66	COG	COG5546	NA	NA
UHGV-0069741_66	Structural annotation	COG5546	NA	NA
UHGV-0069741_67	PHROG	phrog_1863	NA	unknown function
UHGV-0069741_67	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0069741_68	PHROG	phrog_16701	peptidase	other
UHGV-0069741_68	UniRef90	UniRef90_A0A352NP54	Pept_C1 domain-containing protein	NA
UHGV-0069741_68	eggNOG-mapper	635013.TherJR_0863	PFAM copper amine oxidase domain protein	NA
UHGV-0069741_68	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-0069741_68	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0069741_68	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0069741_68	Structural annotation	PF00112, PF07833, COG4870	NA	NA
UHGV-0069741_70	PHROG	phrog_13589	NA	unknown function
UHGV-0069741_70	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0069741_71	PHROG	phrog_31538	NA	unknown function
UHGV-0069741_71	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0069741_72	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0069741_73	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0069741_73	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0069741_75	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0069741_75	eggNOG-mapper	1232449.BAHV02000010_gene2732	NA	NA
UHGV-0069741_75	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0069741_75	Structural annotation	PF21722	NA	NA