UHGV-0069759

Genome information

Genome length 11,321 bps

CDS count 16

Completeness 83.27% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069759
vOTU ID	vOTU-042266
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137546
BioSample	SAMEA2737774
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.82
Jumbo phage	No

Genome content
Genome length	11,321 bps
GC content	40.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	16
CDS density	97.07%
Average CDS length	694.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069759_2	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0069759_2	Pfam	PF04026	SpoVG	SpoVG
UHGV-0069759_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0069759_3	PHROG	phrog_894	endolysin	lysis
UHGV-0069759_3	UniRef90	UniRef90_B1C9L9	Putative peptidoglycan binding domain protein	NA
UHGV-0069759_3	eggNOG-mapper	445971.ANASTE_02319	Peptidase M15	NA
UHGV-0069759_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0069759_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0069759_3	COG	COG3108	NA	NA
UHGV-0069759_3	Structural annotation	PF05951, PF01471, COG3108	NA	NA
UHGV-0069759_4	PHROG	phrog_1863	NA	unknown function
UHGV-0069759_4	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0069759_5	PHROG	phrog_443	holin	lysis
UHGV-0069759_5	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0069759_5	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0069759_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0069759_5	Structural annotation	PF16945	NA	NA
UHGV-0069759_7	UniRef90	UniRef90_A0A843HBI5	Ig-like domain-containing protein	NA
UHGV-0069759_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0069759_8	Structural annotation	PF20934	NA	NA
UHGV-0069759_9	PHROG	phrog_2038	upper collar connector	connector
UHGV-0069759_9	UniRef90	UniRef90_Q9FZW5	Head-tail connector (Portal protein)	NA
UHGV-0069759_9	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-0069759_9	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0069759_9	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0069759_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-0069759_12	UniRef90	UniRef90_A0A843HMF6	Phage DNA encapsidation protein	NA
UHGV-0069759_12	eggNOG-mapper	10747.Q38007_BPCP1	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0069759_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0069759_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069759_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0069759_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0069759_14	UniRef90	UniRef90_A0A2Z4GUK5	DNA polymerase	NA
UHGV-0069759_14	eggNOG-mapper	1309583.M4W9P3_9CAUD	nucleotide binding	NA
UHGV-0069759_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0069759_14	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA