UHGV-0069818

Genome information

Genome length 63,097 bps

CDS count 63

Completeness 99.45% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069818
vOTU ID	vOTU-014405
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_125715
BioSample	SAMEA2737700
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.45% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.06
Jumbo phage	No

Genome content
Genome length	63,097 bps
GC content	47.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	95.85%
Average CDS length	963.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069818_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0069818_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0069818_1	UniRef90	UniRef90_D7ICL1	Phage_int_SAM_5 domain-containing protein	NA
UHGV-0069818_1	eggNOG-mapper	679191.HMPREF9018_0457	Belongs to the 'phage' integrase family	NA
UHGV-0069818_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0069818_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069818_1	Structural annotation	PF13102, PF17293, NF007246, COG4973	NA	NA
UHGV-0069818_4	UniRef90	UniRef90_A0A5J4QQ00	NA	NA
UHGV-0069818_4	eggNOG-mapper	714943.Mucpa_4920	NA	NA
UHGV-0069818_5	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0069818_6	eggNOG-mapper	1121098.HMPREF1534_01129	NA	NA
UHGV-0069818_7	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0069818_7	UniRef90	UniRef90_A0A7I9ZY07	Helicase C-terminal domain-containing protein	NA
UHGV-0069818_7	eggNOG-mapper	1227276.HMPREF9148_00165	helicase superfamily c-terminal domain	NA
UHGV-0069818_7	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0069818_7	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-0069818_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0069818_7	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0069818_7	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0069818_8	PHROG	phrog_156	portal protein	head and packaging
UHGV-0069818_8	eggNOG-mapper	1227276.HMPREF9148_00164	NA	NA
UHGV-0069818_8	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0069818_9	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-0069818_9	eggNOG-mapper	240015.ACP_1166	Catalyzes the synthesis of activated sulfate	NA
UHGV-0069818_9	COG	COG0529	Adenylylsulfate kinase or related kinase	NA
UHGV-0069818_9	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0069818_11	PHROG	phrog_22658	NA	unknown function
UHGV-0069818_12	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0069818_12	UniRef90	UniRef90_UPI001021DF7C	terminase	NA
UHGV-0069818_12	eggNOG-mapper	1227276.HMPREF9148_00162	Mu-like prophage FluMu protein gp28	NA
UHGV-0069818_12	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0069818_12	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0069818_13	UniRef90	UniRef90_UPI001F4088C5	rhomboid family intramembrane serine protease	NA
UHGV-0069818_13	eggNOG-mapper	1121098.HMPREF1534_01123	Rhomboid family	NA
UHGV-0069818_13	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0069818_13	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-0069818_14	PHROG	phrog_27246	NA	unknown function
UHGV-0069818_14	eggNOG-mapper	1121098.HMPREF1534_01122	NA	NA
UHGV-0069818_15	PHROG	phrog_22323	NA	unknown function
UHGV-0069818_15	eggNOG-mapper	1227276.HMPREF9148_00160	NA	NA
UHGV-0069818_16	PHROG	phrog_26635	NA	unknown function
UHGV-0069818_16	UniRef90	UniRef90_UPI0019250C39	NA	NA
UHGV-0069818_16	eggNOG-mapper	1227276.HMPREF9148_00159	NA	NA
UHGV-0069818_16	Structural annotation	PF17236, MF_04133, TIGR01554, COG4834	NA	NA
UHGV-0069818_17	PHROG	phrog_23743	NA	unknown function
UHGV-0069818_17	eggNOG-mapper	1121098.HMPREF1534_01119	NA	NA
UHGV-0069818_18	PHROG	phrog_22135	NA	unknown function
UHGV-0069818_18	eggNOG-mapper	679191.HMPREF9018_0450	NA	NA
UHGV-0069818_18	Structural annotation	PF17212	NA	NA
UHGV-0069818_19	eggNOG-mapper	1121098.HMPREF1534_01117	NA	NA
UHGV-0069818_19	Structural annotation	PF21602	NA	NA
UHGV-0069818_21	PHROG	phrog_28731	NA	unknown function
UHGV-0069818_21	UniRef90	UniRef90_UPI001C38A0C8	CotH kinase family protein	NA
UHGV-0069818_21	eggNOG-mapper	1233951.IO90_08605	CotH kinase protein	NA
UHGV-0069818_21	Pfam	PF08757	CotH kinase protein	CotH
UHGV-0069818_21	Structural annotation	PF08757, COG5337	NA	NA
UHGV-0069818_24	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0069818_24	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0069818_24	UniRef90	UniRef90_A0A3N2MIV3	RNA-directed DNA polymerase	NA
UHGV-0069818_24	eggNOG-mapper	1341181.FLJC2902T_17270	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0069818_24	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0069818_24	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0069818_24	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0069818_25	UniRef90	UniRef90_UPI001F20F464	phage holin family protein	NA
UHGV-0069818_25	eggNOG-mapper	742726.HMPREF9448_01212	NA	NA
UHGV-0069818_26	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0069818_26	PHROG	phrog_822	amidase	lysis
UHGV-0069818_26	UniRef90	UniRef90_UPI00177F7043	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069818_26	eggNOG-mapper	679191.HMPREF9018_0443	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069818_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0069818_26	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0069818_26	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0069818_27	eggNOG-mapper	470145.BACCOP_01117	NA	NA
UHGV-0069818_28	PHROG	phrog_35482	NA	unknown function
UHGV-0069818_28	eggNOG-mapper	679191.HMPREF9018_0441	NA	NA
UHGV-0069818_29	PHROG	phrog_19255	NA	unknown function
UHGV-0069818_29	eggNOG-mapper	1227276.HMPREF9148_00146	NA	NA
UHGV-0069818_30	PHROG	phrog_19255	NA	unknown function
UHGV-0069818_30	eggNOG-mapper	1121098.HMPREF1534_01102	NA	NA
UHGV-0069818_31	PHROG	phrog_32516	NA	unknown function
UHGV-0069818_31	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0069818_31	Structural annotation	PF11134, COG3292	NA	NA
UHGV-0069818_32	UniRef90	UniRef90_UPI001C389B65	amiloride-sensitive sodium channel family protein	NA
UHGV-0069818_33	PHROG	phrog_30264	NA	unknown function
UHGV-0069818_33	eggNOG-mapper	679191.HMPREF9018_0438	NA	NA
UHGV-0069818_33	Structural annotation	NF001477	NA	NA
UHGV-0069818_34	PHROG	phrog_30965	NA	unknown function
UHGV-0069818_34	UniRef90	UniRef90_R7IZL2	Conserved domain protein	NA
UHGV-0069818_34	eggNOG-mapper	1227276.HMPREF9148_00142	NA	NA
UHGV-0069818_34	Structural annotation	NF010236	NA	NA
UHGV-0069818_35	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0069818_35	UniRef90	UniRef90_UPI0011DCE920	NA	NA
UHGV-0069818_35	eggNOG-mapper	762982.HMPREF9442_01214	NA	NA
UHGV-0069818_35	Pfam	PF14359	NA	DUF4406
UHGV-0069818_35	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0069818_39	PHROG	phrog_874	NA	unknown function
UHGV-0069818_39	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0069818_39	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0069818_43	UniRef90	UniRef90_R5IHK6	NA	NA
UHGV-0069818_43	eggNOG-mapper	357276.EL88_12560	NA	NA
UHGV-0069818_43	Pfam	PF10979	NA	DUF2786
UHGV-0069818_44	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0069818_44	UniRef90	UniRef90_UPI000D8268DD	radical SAM protein	NA
UHGV-0069818_44	eggNOG-mapper	762968.HMPREF9441_00539	radical SAM domain protein	NA
UHGV-0069818_44	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0069818_44	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0069818_46	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0069818_46	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069818_46	UniRef90	UniRef90_E1GUD0	ATPase_AAA_core domain-containing protein	NA
UHGV-0069818_46	eggNOG-mapper	679191.HMPREF9018_0431	DNA-dependent DNA replication	NA
UHGV-0069818_46	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0069818_46	Structural annotation	PF00308, MF_03025, NF005992, COG1484	NA	NA
UHGV-0069818_47	PHROG	phrog_16706	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0069818_47	UniRef90	UniRef90_UPI001021B65C	NA	NA
UHGV-0069818_47	eggNOG-mapper	1121098.HMPREF1534_01079	NA	NA
UHGV-0069818_47	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0069818_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0069818_47	Structural annotation	PF14297	NA	NA
UHGV-0069818_48	PHROG	phrog_824	NA	unknown function
UHGV-0069818_48	UniRef90	UniRef90_E1GUC8	VRR-NUC domain protein	NA
UHGV-0069818_48	eggNOG-mapper	679191.HMPREF9018_0429	VRR_NUC	NA
UHGV-0069818_48	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0069818_49	PHROG	phrog_19572	NA	unknown function
UHGV-0069818_49	UniRef90	UniRef90_UPI001E597AEB	NA	NA
UHGV-0069818_49	eggNOG-mapper	1121098.HMPREF1534_01077	NA	NA
UHGV-0069818_49	Pfam	PF14902	NA	DUF4494
UHGV-0069818_49	Structural annotation	PF14902	NA	NA
UHGV-0069818_50	PHROG	phrog_32732	NA	unknown function
UHGV-0069818_50	UniRef90	UniRef90_F3QSM2	Conserved domain protein	NA
UHGV-0069818_50	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0069818_50	dbAPIS	APIS052	NA	NA
UHGV-0069818_50	Structural annotation	PF10458	NA	NA
UHGV-0069818_51	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0069818_51	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069818_51	UniRef90	UniRef90_A0A1I7A0F5	DNA-binding protein HU-beta	NA
UHGV-0069818_51	eggNOG-mapper	755732.Fluta_0181	bacterial (prokaryotic) histone like domain	NA
UHGV-0069818_51	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0069818_51	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0069818_51	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0069818_52	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0069818_52	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0069818_52	UniRef90	UniRef90_A0A6A2JIV5	DEAD/DEAH box helicase	NA
UHGV-0069818_52	eggNOG-mapper	679191.HMPREF9018_0425	SNF2 family N-terminal domain	NA
UHGV-0069818_52	PADLOC	ZorD1_00003	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0069818_52	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0069818_52	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0069818_52	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0069818_53	PHROG	phrog_27435	NA	unknown function
UHGV-0069818_54	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0069818_54	UniRef90	UniRef90_UPI00102252F1	NA	NA
UHGV-0069818_54	eggNOG-mapper	1046714.AMRX01000006_gene3162	NA	NA
UHGV-0069818_54	Pfam	PF07105	NA	DUF1367
UHGV-0069818_54	Structural annotation	PF07105	NA	NA
UHGV-0069818_55	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0069818_55	UniRef90	UniRef90_UPI00076095A9	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0069818_55	eggNOG-mapper	679191.HMPREF9018_0424	NA	NA
UHGV-0069818_55	Structural annotation	PF06023, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0069818_56	eggNOG-mapper	679191.HMPREF9018_0423	NA	NA
UHGV-0069818_57	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0069818_57	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069818_57	UniRef90	UniRef90_UPI001020D293	recombinase RecT	NA
UHGV-0069818_57	eggNOG-mapper	679191.HMPREF9018_0422	RecT family	NA
UHGV-0069818_57	Pfam	PF03837	RecT family	RecT
UHGV-0069818_57	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0069818_57	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0069818_58	eggNOG-mapper	1121098.HMPREF1534_01070	NA	NA
UHGV-0069818_58	Structural annotation	NF033787	NA	NA
UHGV-0069818_61	UniRef90	UniRef90_A0A7J0A4R8	HTH cro/C1-type domain-containing protein	NA
UHGV-0069818_61	eggNOG-mapper	153721.MYP_260	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0069818_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069818_61	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0069818_61	Structural annotation	PF13560, MF_00535, TIGR03070, COG3655	NA	NA