UHGV-0069846

Genome information

Genome length 30,775 bps

CDS count 49

Completeness 76.10% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069846
vOTU ID	vOTU-041436
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_126573
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.78
Jumbo phage	No

Genome content
Genome length	30,775 bps
GC content	37.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.40%
Average CDS length	570.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069846_1	eggNOG-mapper	999415.HMPREF9943_00151	Subtilase family	NA
UHGV-0069846_1	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0069846_2	KOfam	K14059	int; integrase	NA
UHGV-0069846_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0069846_2	UniRef90	UniRef90_A0A173S3V2	Tyrosine recombinase XerD	NA
UHGV-0069846_2	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0069846_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069846_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069846_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0069846_3	eggNOG-mapper	1336241.JAEB01000003_gene509	NA	NA
UHGV-0069846_4	PHROG	phrog_87	metallo-protease	other
UHGV-0069846_4	UniRef90	UniRef90_A0A173S221	Metallopeptidase immA	NA
UHGV-0069846_4	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0069846_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0069846_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0069846_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0069846_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069846_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0069846_5	UniRef90	UniRef90_UPI00156FC18E	helix-turn-helix domain-containing protein	NA
UHGV-0069846_5	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0069846_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069846_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0069846_5	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0069846_6	UniRef90	UniRef90_UPI00156F72A2	NA	NA
UHGV-0069846_6	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0069846_6	Pfam	PF05339	NA	DUF739
UHGV-0069846_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0069846_8	PHROG	phrog_4989	NA	unknown function
UHGV-0069846_8	Structural annotation	PF19190, MF_00791, NF011735, COG3354	NA	NA
UHGV-0069846_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069846_9	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-0069846_9	eggNOG-mapper	748224.HMPREF9436_01450	NA	NA
UHGV-0069846_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069846_9	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0069846_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0069846_13	UniRef90	UniRef90_UPI001C8D41EE	siphovirus Gp157 family protein	NA
UHGV-0069846_13	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-0069846_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0069846_13	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0069846_14	PHROG	phrog_14970	NA	unknown function
UHGV-0069846_14	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0069846_14	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0069846_14	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0069846_14	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0069846_15	PHROG	phrog_398	NA	unknown function
UHGV-0069846_15	UniRef90	UniRef90_UPI0001F01BA5	putative HNHc nuclease	NA
UHGV-0069846_15	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0069846_15	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0069846_15	Structural annotation	PF16784, NF007281	NA	NA
UHGV-0069846_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069846_16	UniRef90	UniRef90_A0A5B3G7W7	NA	NA
UHGV-0069846_16	eggNOG-mapper	879308.HMPREF9130_0415	NA	NA
UHGV-0069846_16	Pfam	PF06356	NA	DUF1064
UHGV-0069846_16	Structural annotation	PF06356	NA	NA
UHGV-0069846_17	PHROG	phrog_16304	NA	unknown function
UHGV-0069846_17	UniRef90	UniRef90_L1Q6L3	NA	NA
UHGV-0069846_17	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0069846_17	Pfam	PF19808	NA	DUF6291
UHGV-0069846_17	Structural annotation	PF19808	NA	NA
UHGV-0069846_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0069846_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0069846_18	UniRef90	UniRef90_A0A417UT83	Oxidoreductase	NA
UHGV-0069846_18	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0069846_18	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0069846_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0069846_18	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0069846_18	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0069846_19	PHROG	phrog_17690	NA	unknown function
UHGV-0069846_19	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0069846_19	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0069846_21	PHROG	phrog_31515	NA	unknown function
UHGV-0069846_21	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0069846_22	PHROG	phrog_21101	NA	unknown function
UHGV-0069846_22	UniRef90	UniRef90_D4N1K4	NA	NA
UHGV-0069846_22	eggNOG-mapper	1408423.JHYA01000001_gene947	NA	NA
UHGV-0069846_22	Pfam	PF07866	NA	DUF1653
UHGV-0069846_22	COG	COG4728	NA	NA
UHGV-0069846_22	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0069846_23	Pfam	PF12664	NA	DUF3789
UHGV-0069846_24	UniRef90	UniRef90_L1Q0F3	DNA-binding helix-turn-helix protein	NA
UHGV-0069846_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069846_25	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0069846_25	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0069846_25	Structural annotation	PF02996	NA	NA
UHGV-0069846_26	PHROG	phrog_872	NA	unknown function
UHGV-0069846_26	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0069846_26	dbAPIS	APIS052	NA	NA
UHGV-0069846_27	PHROG	phrog_918	NA	unknown function
UHGV-0069846_27	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0069846_27	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0069846_27	Pfam	PF19791	NA	DUF6275
UHGV-0069846_27	Structural annotation	PF19791	NA	NA
UHGV-0069846_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0069846_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0069846_28	UniRef90	UniRef90_A0A374AP68	Terminase small subunit	NA
UHGV-0069846_28	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0069846_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0069846_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0069846_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0069846_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069846_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0069846_29	UniRef90	UniRef90_A0A1Q9JQ23	Terminase	NA
UHGV-0069846_29	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-0069846_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0069846_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0069846_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069846_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069846_29	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069846_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0069846_30	UniRef90	UniRef90_A0A1Q9JPY8	Phage portal protein	NA
UHGV-0069846_30	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0069846_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069846_30	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0069846_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0069846_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0069846_31	UniRef90	UniRef90_A0A1Q9JPY4	Phage_Mu_F domain-containing protein	NA
UHGV-0069846_31	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0069846_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0069846_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0069846_31	COG	COG2369	NA	NA
UHGV-0069846_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0069846_33	KOfam	K07584	NA	NA
UHGV-0069846_33	PHROG	phrog_4478	peptidase	other
UHGV-0069846_33	UniRef90	UniRef90_A0A1C5WDE4	Predicted ribosomal protein	NA
UHGV-0069846_33	eggNOG-mapper	1235798.C817_03478	Pfam:Peptidase_C108	NA
UHGV-0069846_33	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0069846_33	COG	COG2868	NA	NA
UHGV-0069846_33	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0069846_34	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0069846_34	UniRef90	UniRef90_A0A374APH2	NA	NA
UHGV-0069846_34	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0069846_34	Pfam	PF14265	NA	DUF4355
UHGV-0069846_34	Structural annotation	PF14265	NA	NA
UHGV-0069846_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-0069846_35	UniRef90	UniRef90_A0A1Q9JVQ7	S-l_SbsC_C domain-containing protein	NA
UHGV-0069846_35	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0069846_35	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0069846_35	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0069846_36	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0069846_36	eggNOG-mapper	202752.JL53_03755	NA	NA
UHGV-0069846_37	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0069846_37	UniRef90	UniRef90_UPI001D03FC16	phage head-tail connector protein	NA
UHGV-0069846_37	eggNOG-mapper	1235798.C817_03475	Phage gp6-like head-tail connector protein	NA
UHGV-0069846_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0069846_37	Structural annotation	PF05135	NA	NA
UHGV-0069846_38	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0069846_38	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0069846_38	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0069846_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0069846_39	UniRef90	UniRef90_UPI001BADC8E2	HK97 gp10 family phage protein	NA
UHGV-0069846_39	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0069846_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0069846_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0069846_39	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0069846_40	PHROG	phrog_176	tail terminator	connector
UHGV-0069846_40	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-0069846_40	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0069846_40	Structural annotation	PF11367	NA	NA
UHGV-0069846_41	PHROG	phrog_238	major tail protein	tail
UHGV-0069846_41	UniRef90	UniRef90_A0A374APJ8	Phage major tail protein, TP901-1 family	NA
UHGV-0069846_41	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0069846_41	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0069846_41	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0069846_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0069846_42	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0069846_42	UniRef90	UniRef90_UPI001EDE7A75	tail assembly chaperone	NA
UHGV-0069846_42	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0069846_42	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0069846_42	Structural annotation	PF12363	NA	NA
UHGV-0069846_43	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0069846_43	UniRef90	UniRef90_A0A0K9N8J7	NA	NA
UHGV-0069846_43	eggNOG-mapper	476272.RUMHYD_02862	NA	NA
UHGV-0069846_44	PHROG	phrog_1204	tail protein	tail
UHGV-0069846_44	UniRef90	UniRef90_A0A374AQH4	TMP_3 domain-containing protein	NA
UHGV-0069846_44	eggNOG-mapper	326425.lhe_1203	phage tail tape measure protein	NA
UHGV-0069846_44	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0069846_44	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0069846_44	COG	COG5412	Phage-related protein	NA
UHGV-0069846_45	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0069846_45	UniRef90	UniRef90_UPI001EE13C6C	phage tail family protein	NA
UHGV-0069846_45	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-0069846_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0069846_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0069846_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0069846_45	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0069846_46	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0069846_46	UniRef90	UniRef90_UPI001EDFD86A	phage tail protein	NA
UHGV-0069846_46	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0069846_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0069846_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0069846_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0069846_48	eggNOG-mapper	657322.FPR_22010	NA	NA