UHGV-0069848

Genome information

Genome length 37,596 bps

CDS count 58

Completeness 97.86% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069848
vOTU ID	vOTU-014362
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_126570
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.27
Jumbo phage	No

Genome content
Genome length	37,596 bps
GC content	42.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.11%
Average CDS length	601.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069848_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0069848_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0069848_2	UniRef90	UniRef90_UPI0011853F05	recombinase family protein	NA
UHGV-0069848_2	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0069848_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0069848_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0069848_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0069848_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0069848_2	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0069848_3	PHROG	phrog_7115	NA	unknown function
UHGV-0069848_3	UniRef90	UniRef90_UPI001CD3F351	PH domain-containing protein	NA
UHGV-0069848_3	eggNOG-mapper	471855.Shel_11460	Bacterial PH domain	NA
UHGV-0069848_3	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0069848_3	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0069848_4	eggNOG-mapper	411461.DORFOR_00034	NA	NA
UHGV-0069848_4	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0069848_5	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0069848_5	UniRef90	UniRef90_A7B3P8	DNA-binding helix-turn-helix protein	NA
UHGV-0069848_5	eggNOG-mapper	411470.RUMGNA_02178	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0069848_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069848_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0069848_6	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-0069848_6	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0069848_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0069848_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069848_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0069848_7	UniRef90	UniRef90_A0A894KEH6	Alcohol dehydrogenase	NA
UHGV-0069848_9	PHROG	phrog_28292	NA	unknown function
UHGV-0069848_9	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0069848_9	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0069848_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0069848_10	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0069848_10	UniRef90	UniRef90_UPI0015706F54	phage regulatory protein/antirepressor Ant	NA
UHGV-0069848_10	eggNOG-mapper	1582156.A0A0A8WJ71_9CAUD	DNA binding	NA
UHGV-0069848_10	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0069848_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0069848_10	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0069848_10	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3646	NA	NA
UHGV-0069848_11	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0069848_14	PHROG	phrog_7964	NA	unknown function
UHGV-0069848_14	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0069848_14	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0069848_14	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0069848_14	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0069848_14	Structural annotation	NF040481	NA	NA
UHGV-0069848_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0069848_17	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0069848_17	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0069848_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0069848_17	Structural annotation	PF05565	NA	NA
UHGV-0069848_18	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069848_18	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0069848_18	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0069848_18	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0069848_19	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0069848_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0069848_20	PHROG	phrog_7566	NA	unknown function
UHGV-0069848_20	UniRef90	UniRef90_UPI0015D0E661	phosphoenolpyruvate carboxykinase	NA
UHGV-0069848_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0069848_21	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069848_21	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0069848_21	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0069848_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0069848_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069848_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0069848_22	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069848_22	UniRef90	UniRef90_UPI001D042A59	phage replication initiation protein	NA
UHGV-0069848_22	eggNOG-mapper	931626.Awo_c31180	DnaD domain protein	NA
UHGV-0069848_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0069848_22	Structural annotation	TIGR01714	NA	NA
UHGV-0069848_23	PHROG	phrog_25488	NA	unknown function
UHGV-0069848_23	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0069848_25	UniRef90	UniRef90_UPI000E4AEE34	NA	NA
UHGV-0069848_25	eggNOG-mapper	411470.RUMGNA_02006	NA	NA
UHGV-0069848_25	Pfam	PF14199	NA	DUF4317
UHGV-0069848_25	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0069848_28	PHROG	phrog_17690	NA	unknown function
UHGV-0069848_28	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0069848_28	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0069848_30	PHROG	phrog_10714	NA	unknown function
UHGV-0069848_30	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0069848_30	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0069848_33	Structural annotation	PF02895	NA	NA
UHGV-0069848_34	UniRef90	UniRef90_A0A2N5PB17	NA	NA
UHGV-0069848_34	Pfam	PF04448	NA	DUF551
UHGV-0069848_34	Structural annotation	NF041588	NA	NA
UHGV-0069848_35	UniRef90	UniRef90_A0A395V1U8	Restriction alleviation protein, Lar family	NA
UHGV-0069848_35	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0069848_35	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0069848_37	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0069848_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069848_39	UniRef90	UniRef90_A0A1Y4H4M5	RNA polymerase subunit sigma-70	NA
UHGV-0069848_39	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0069848_39	Structural annotation	PF02996	NA	NA
UHGV-0069848_40	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0069848_40	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0069848_40	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0069848_40	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0069848_40	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0069848_40	Structural annotation	PF07141	NA	NA
UHGV-0069848_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069848_41	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0069848_41	UniRef90	UniRef90_A0A2N5PKF3	Terminase	NA
UHGV-0069848_41	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0069848_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0069848_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069848_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069848_41	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069848_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0069848_42	UniRef90	UniRef90_A0A2N5PKH7	Phage capsid protein	NA
UHGV-0069848_42	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0069848_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0069848_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0069848_43	UniRef90	UniRef90_A0A2N5PKG3	Minor capsid protein	NA
UHGV-0069848_43	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0069848_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0069848_43	COG	COG2369	NA	NA
UHGV-0069848_43	Structural annotation	PF06152	NA	NA
UHGV-0069848_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0069848_44	UniRef90	UniRef90_A0A6N2UWT0	Phage minor structural protein GP20	NA
UHGV-0069848_44	eggNOG-mapper	1304866.K413DRAFT_3037	Phage minor structural protein GP20	NA
UHGV-0069848_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0069848_44	Structural annotation	PF06810	NA	NA
UHGV-0069848_45	PHROG	phrog_422	major head protein	head and packaging
UHGV-0069848_45	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0069848_45	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0069848_46	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0069848_46	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0069848_46	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0069848_46	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0069848_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0069848_47	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0069848_48	PHROG	phrog_3366	NA	unknown function
UHGV-0069848_48	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0069848_48	Pfam	PF20536	NA	DUF6751
UHGV-0069848_48	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0069848_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0069848_49	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0069848_49	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0069848_49	Structural annotation	PF11114	NA	NA
UHGV-0069848_50	PHROG	phrog_3266	tail completion	connector
UHGV-0069848_50	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0069848_50	Structural annotation	PF12691	NA	NA
UHGV-0069848_51	PHROG	phrog_3099	NA	unknown function
UHGV-0069848_51	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0069848_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0069848_52	PHROG	phrog_4450	NA	unknown function
UHGV-0069848_52	UniRef90	UniRef90_UPI001C0AC01D	AP endonuclease	NA
UHGV-0069848_52	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0069848_52	Pfam	PF20378	NA	DUF6673
UHGV-0069848_52	Structural annotation	PF20378	NA	NA
UHGV-0069848_53	PHROG	phrog_706	NA	unknown function
UHGV-0069848_53	UniRef90	UniRef90_UPI00195660EF	Gp15 family bacteriophage protein	NA
UHGV-0069848_53	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0069848_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0069848_53	Structural annotation	PF06854	NA	NA
UHGV-0069848_54	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0069848_54	UniRef90	UniRef90_A0A174ADB2	Phage-related protein	NA
UHGV-0069848_54	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0069848_54	COG	COG1511	NA	NA
UHGV-0069848_54	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0069848_55	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0069848_55	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0069848_55	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0069848_55	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0069848_55	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0069848_55	COG	COG4722	Phage-related protein YomH	NA
UHGV-0069848_55	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0069848_56	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0069848_56	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0069848_56	UniRef90	UniRef90_UPI00156EB2FA	collagen-like protein	NA
UHGV-0069848_56	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0069848_56	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0069848_56	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0069848_56	Structural annotation	PF14594, PF08931, PF13895, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-0069848_57	PHROG	phrog_199	holin	lysis
UHGV-0069848_57	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-0069848_57	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0069848_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0069848_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0069848_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0069848_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0069848_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0069848_58	PHROG	phrog_833	endolysin	lysis
UHGV-0069848_58	UniRef90	UniRef90_A0A2N5Q1W5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0069848_58	eggNOG-mapper	1232453.BAIF02000059_gene1616	Ami_2	NA
UHGV-0069848_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0069848_58	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0069848_58	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA