UHGV-0069888

Genome information

Genome length 34,880 bps

CDS count 63

Completeness 97.53% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069888
vOTU ID	vOTU-078046
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_109530
BioSample	SAMEA2580132
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.51
Jumbo phage	No

Genome content
Genome length	34,880 bps
GC content	44.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	89.72%
Average CDS length	501.67 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069888_1	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069888_1	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-0069888_1	eggNOG-mapper	1348583.ATLH01000031_gene1927	DnaD domain protein	NA
UHGV-0069888_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0069888_1	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0069888_2	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0069888_2	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0069888_2	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-0069888_2	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0069888_2	Pfam	PF06745	KaiC	ATPase
UHGV-0069888_2	COG	COG0305	Replicative DNA helicase	NA
UHGV-0069888_2	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0069888_5	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0069888_5	UniRef90	UniRef90_A0A6M3L5L0	Putative methyltransferase	NA
UHGV-0069888_5	eggNOG-mapper	1226322.HMPREF1545_03521	C-5 cytosine-specific DNA methylase	NA
UHGV-0069888_5	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0069888_6	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0069888_6	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0069888_6	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0069888_6	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0069888_10	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0069888_10	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0069888_12	PHROG	phrog_25732	NA	unknown function
UHGV-0069888_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069888_15	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-0069888_15	eggNOG-mapper	883112.HMPREF9707_01621	NA	NA
UHGV-0069888_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0069888_15	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0069888_16	Structural annotation	PF09274, NF041284, COG4877	NA	NA
UHGV-0069888_20	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0069888_20	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0069888_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0069888_20	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0069888_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0069888_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0069888_21	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0069888_21	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0069888_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0069888_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0069888_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0069888_21	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0069888_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0069888_22	UniRef90	UniRef90_A0A1C6H763	Phage portal protein, HK97 family	NA
UHGV-0069888_22	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0069888_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0069888_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0069888_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0069888_22	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0069888_23	KOfam	K06904	NA	NA
UHGV-0069888_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0069888_23	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-0069888_23	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0069888_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0069888_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0069888_23	COG	COG3740	Phage head maturation protease	NA
UHGV-0069888_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0069888_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0069888_24	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069888_24	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0069888_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0069888_24	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0069888_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0069888_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069888_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0069888_25	PHROG	phrog_2550	NA	unknown function
UHGV-0069888_25	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0069888_25	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0069888_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0069888_26	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0069888_26	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0069888_26	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0069888_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0069888_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0069888_27	UniRef90	UniRef90_UPI000C7BEE97	HK97 gp10 family phage protein	NA
UHGV-0069888_27	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0069888_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0069888_27	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0069888_28	PHROG	phrog_78	tail terminator	connector
UHGV-0069888_28	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0069888_28	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-0069888_28	Structural annotation	PF20765	NA	NA
UHGV-0069888_29	PHROG	phrog_88	major tail protein	tail
UHGV-0069888_29	UniRef90	UniRef90_A0A1C6H6F0	Phage major tail protein, phi13 family	NA
UHGV-0069888_29	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0069888_29	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0069888_29	Structural annotation	PF06488, TIGR01603, COG3157	NA	NA
UHGV-0069888_30	PHROG	phrog_709	NA	unknown function
UHGV-0069888_30	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0069888_30	Structural annotation	PF11836	NA	NA
UHGV-0069888_31	PHROG	phrog_3033	NA	unknown function
UHGV-0069888_31	eggNOG-mapper	1280671.AUJH01000012_gene3142	NA	NA
UHGV-0069888_32	PHROG	phrog_23464	NA	unknown function
UHGV-0069888_32	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0069888_32	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0069888_32	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0069888_32	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0069888_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0069888_33	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0069888_33	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0069888_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-0069888_33	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0069888_34	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0069888_34	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0069888_34	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0069888_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0069888_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0069888_34	COG	COG4926	Phage-related protein	NA
UHGV-0069888_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0069888_35	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0069888_35	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-0069888_35	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0069888_35	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0069888_35	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0069888_36	KOfam	K07273	acm; lysozyme	NA
UHGV-0069888_36	PHROG	phrog_291	endolysin	lysis
UHGV-0069888_36	UniRef90	UniRef90_A0A1C5NS63	Autolytic lysozyme	NA
UHGV-0069888_36	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0069888_36	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0069888_36	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0069888_36	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0069888_37	PHROG	phrog_1863	NA	unknown function
UHGV-0069888_37	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0069888_37	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0069888_38	PHROG	phrog_297	holin	lysis
UHGV-0069888_38	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-0069888_38	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-0069888_38	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0069888_38	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0069888_38	COG	COG5546	NA	NA
UHGV-0069888_38	Structural annotation	COG5546	NA	NA
UHGV-0069888_41	PHROG	phrog_13890	NA	unknown function
UHGV-0069888_41	UniRef90	UniRef90_A0A1C6F5F6	Arc domain-containing protein	NA
UHGV-0069888_41	eggNOG-mapper	742738.HMPREF9460_00716	NA	NA
UHGV-0069888_41	Pfam	PF05534	HicB family	HicB
UHGV-0069888_41	Structural annotation	PF10723, NF010256	NA	NA
UHGV-0069888_43	KOfam	K14059	int; integrase	NA
UHGV-0069888_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0069888_43	UniRef90	UniRef90_A0A1C6FNS1	Integrase	NA
UHGV-0069888_43	eggNOG-mapper	428125.CLOLEP_01837	Belongs to the 'phage' integrase family	NA
UHGV-0069888_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069888_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0069888_43	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0069888_45	PHROG	phrog_17572	NA	unknown function
UHGV-0069888_45	UniRef90	UniRef90_A0A0H4LIJ8	Prophage ps2 protein 03	NA
UHGV-0069888_45	eggNOG-mapper	1499683.CCFF01000017_gene3026	NA	NA
UHGV-0069888_45	Structural annotation	PF13783, MF_01122	NA	NA
UHGV-0069888_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069888_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069888_47	UniRef90	UniRef90_UPI0019565CF8	helix-turn-helix transcriptional regulator	NA
UHGV-0069888_47	eggNOG-mapper	1504823.CCMM01000008_gene1055	sequence-specific DNA binding	NA
UHGV-0069888_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069888_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069888_47	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0069888_48	UniRef90	UniRef90_A0A0D8IY67	HTH cro/C1-type domain-containing protein	NA
UHGV-0069888_48	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0069888_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069888_48	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0069888_51	PHROG	phrog_750	NA	unknown function
UHGV-0069888_51	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0069888_52	PHROG	phrog_4392	NA	unknown function
UHGV-0069888_52	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0069888_60	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069888_60	UniRef90	UniRef90_A0A412AWF4	ATP-binding protein	NA
UHGV-0069888_60	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0069888_60	Pfam	PF13479	AAA domain	AAA_24
UHGV-0069888_60	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0069888_62	PHROG	phrog_18107	NA	unknown function
UHGV-0069888_62	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0069888_62	Structural annotation	PF05037	NA	NA
UHGV-0069888_63	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0069888_63	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0069888_63	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0069888_63	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0069888_63	COG	COG1948	ERCC4-type crossover junction endonuclease	NA