UHGV-0069898

Genome information

Genome length 36,566 bps

CDS count 61

Completeness 89.03% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069898
vOTU ID	vOTU-018402
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_111905
BioSample	SAMEA2579971
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.56
Jumbo phage	No

Genome content
Genome length	36,566 bps
GC content	45.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.78%
Average CDS length	554.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069898_1	PHROG	phrog_13256	NA	unknown function
UHGV-0069898_1	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0069898_2	PHROG	phrog_1863	NA	unknown function
UHGV-0069898_2	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0069898_2	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0069898_3	eggNOG-mapper	742733.HMPREF9469_02877	NA	NA
UHGV-0069898_3	Structural annotation	PF09693	NA	NA
UHGV-0069898_4	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0069898_5	PHROG	phrog_17196	kinase	other
UHGV-0069898_5	UniRef90	UniRef90_UPI001D08B5ED	pyocin knob domain-containing protein	NA
UHGV-0069898_5	eggNOG-mapper	742733.HMPREF9469_01805	NA	NA
UHGV-0069898_7	PHROG	phrog_18190	NA	unknown function
UHGV-0069898_7	UniRef90	UniRef90_G5HGN8	Peptidase S74 domain-containing protein	NA
UHGV-0069898_7	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0069898_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0069898_7	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0069898_8	PHROG	phrog_1194	NA	unknown function
UHGV-0069898_8	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0069898_8	Pfam	PF20458	NA	DUF6711
UHGV-0069898_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0069898_9	PHROG	phrog_5319	outer membrane protein	other
UHGV-0069898_9	eggNOG-mapper	471855.Shel_11450	sh3 domain protein	NA
UHGV-0069898_9	COG	COG3103	NA	NA
UHGV-0069898_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0069898_10	UniRef90	UniRef90_A0A174GX48	Phage-like protein	NA
UHGV-0069898_10	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0069898_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0069898_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0069898_12	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0069898_12	UniRef90	UniRef90_UPI0008324CF8	NA	NA
UHGV-0069898_12	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0069898_12	Pfam	PF19591	NA	DUF6096
UHGV-0069898_12	Structural annotation	PF19591	NA	NA
UHGV-0069898_13	PHROG	phrog_158	major tail protein	tail
UHGV-0069898_13	UniRef90	UniRef90_UPI001592F4D9	phage tail protein	NA
UHGV-0069898_13	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0069898_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0069898_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0069898_14	PHROG	phrog_78	tail terminator	connector
UHGV-0069898_14	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0069898_14	Structural annotation	PF05657	NA	NA
UHGV-0069898_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0069898_15	UniRef90	UniRef90_UPI001EE062D2	HK97 gp10 family phage protein	NA
UHGV-0069898_15	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0069898_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0069898_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0069898_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0069898_16	PHROG	phrog_2168	NA	unknown function
UHGV-0069898_16	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0069898_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0069898_17	PHROG	phrog_2724	NA	unknown function
UHGV-0069898_17	UniRef90	UniRef90_A0A0F0C809	Rho_N domain-containing protein	NA
UHGV-0069898_17	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0069898_17	Structural annotation	PF07498	NA	NA
UHGV-0069898_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0069898_18	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0069898_18	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0069898_18	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0069898_19	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0069898_19	UniRef90	UniRef90_A0A414AP34	NA	NA
UHGV-0069898_19	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0069898_19	Pfam	PF14265	NA	DUF4355
UHGV-0069898_19	Structural annotation	PF14265	NA	NA
UHGV-0069898_20	UniRef90	UniRef90_UPI0004D8DC63	NA	NA
UHGV-0069898_20	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-0069898_20	Structural annotation	PF11195	NA	NA
UHGV-0069898_21	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0069898_21	UniRef90	UniRef90_G5HGQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0069898_21	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0069898_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0069898_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0069898_21	COG	COG2369	NA	NA
UHGV-0069898_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0069898_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0069898_22	UniRef90	UniRef90_G5HGQ7	SPP1 family phage portal protein	NA
UHGV-0069898_22	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0069898_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069898_22	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0069898_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0069898_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069898_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0069898_23	UniRef90	UniRef90_G5HGQ8	Phage terminase large subunit	NA
UHGV-0069898_23	eggNOG-mapper	742733.HMPREF9469_01827	Terminase RNAseH like domain	NA
UHGV-0069898_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0069898_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0069898_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069898_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069898_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069898_24	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0069898_24	UniRef90	UniRef90_A0A174GY31	Phage-like protein	NA
UHGV-0069898_24	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0069898_24	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0069898_24	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0069898_24	Structural annotation	PF07141	NA	NA
UHGV-0069898_26	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0069898_26	PHROG	phrog_3502	NA	unknown function
UHGV-0069898_26	UniRef90	UniRef90_G5HGR1	LexA_DNA_bind domain-containing protein	NA
UHGV-0069898_26	eggNOG-mapper	742733.HMPREF9469_01830	LexA DNA binding domain	NA
UHGV-0069898_26	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0069898_26	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0069898_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069898_27	eggNOG-mapper	742733.HMPREF9469_01831	NA	NA
UHGV-0069898_27	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0069898_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0069898_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0069898_28	UniRef90	UniRef90_A0A0F0C3Y7	Tyrosine recombinase XerC	NA
UHGV-0069898_28	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0069898_28	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0069898_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069898_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0069898_28	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0069898_29	PHROG	phrog_25231	NA	unknown function
UHGV-0069898_29	eggNOG-mapper	411902.CLOBOL_05673	NA	NA
UHGV-0069898_29	Structural annotation	PF04936	NA	NA
UHGV-0069898_30	UniRef90	UniRef90_A0A0J9CH79	RHH_1 domain-containing protein	NA
UHGV-0069898_30	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0069898_30	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0069898_37	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069898_37	UniRef90	UniRef90_UPI0013F61821	NA	NA
UHGV-0069898_37	eggNOG-mapper	1211817.CCAT010000053_gene2117	NA	NA
UHGV-0069898_37	Pfam	PF12961	NA	DUF3850
UHGV-0069898_37	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0069898_43	PHROG	phrog_15198	NA	unknown function
UHGV-0069898_43	UniRef90	UniRef90_A0A3E2U456	NA	NA
UHGV-0069898_46	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0069898_46	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069898_46	UniRef90	UniRef90_N9XN33	IstB_IS21 domain-containing protein	NA
UHGV-0069898_46	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0069898_46	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0069898_46	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0069898_46	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0069898_47	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069898_47	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0069898_47	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0069898_47	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0069898_48	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0069898_48	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069898_48	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0069898_48	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0069898_48	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069898_48	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0069898_49	PHROG	phrog_7566	NA	unknown function
UHGV-0069898_49	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0069898_49	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0069898_50	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069898_50	UniRef90	UniRef90_G5HGS9	NA	NA
UHGV-0069898_50	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0069898_50	Pfam	PF12684	NA	DUF3799
UHGV-0069898_50	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0069898_50	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0069898_51	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069898_51	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0069898_51	eggNOG-mapper	742733.HMPREF9469_01849	NA	NA
UHGV-0069898_51	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0069898_52	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0069898_52	PHROG	phrog_1499	NA	unknown function
UHGV-0069898_52	UniRef90	UniRef90_D3AA93	AAA_23 domain-containing protein	NA
UHGV-0069898_52	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0069898_52	Pfam	PF13476	AAA domain	AAA_23
UHGV-0069898_52	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0069898_52	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0069898_53	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069898_53	UniRef90	UniRef90_UPI001D0ED280	AP2 domain-containing protein	NA
UHGV-0069898_53	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0069898_53	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0069898_57	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0069898_58	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0069898_58	UniRef90	UniRef90_N9XN14	HTH cro/C1-type domain-containing protein	NA
UHGV-0069898_58	eggNOG-mapper	1121929.KB898689_gene92	Helix-turn-helix XRE-family like proteins	NA
UHGV-0069898_58	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0069898_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069898_58	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0069898_59	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0069898_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069898_59	UniRef90	UniRef90_N9Z7Y7	HTH cro/C1-type domain-containing protein	NA
UHGV-0069898_59	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0069898_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069898_59	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0069898_59	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0069898_60	PHROG	phrog_87	metallo-protease	other
UHGV-0069898_60	UniRef90	UniRef90_A0A3E2U6I8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0069898_60	eggNOG-mapper	318464.IO99_00420	IrrE N-terminal-like domain	NA
UHGV-0069898_60	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0069898_60	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0069898_60	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0069898_61	KOfam	K14059	int; integrase	NA
UHGV-0069898_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0069898_61	UniRef90	UniRef90_A0A174NPS2	Site-specific recombinase XerD	NA
UHGV-0069898_61	eggNOG-mapper	397288.C806_02995	Phage integrase family	NA
UHGV-0069898_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0069898_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069898_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069898_61	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA