UHGV-0069904

Genome information

Genome length 40,223 bps

CDS count 52

Completeness 99.69% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069904
vOTU ID	vOTU-013857
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_111888
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.89
Jumbo phage	No

Genome content
Genome length	40,223 bps
GC content	38.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.43%
Average CDS length	711.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069904_1	UniRef90	UniRef90_R6MMA0	Cell wall surface anchor family protein	NA
UHGV-0069904_1	eggNOG-mapper	1111134.HMPREF1253_0180	Belongs to the peptidase S8 family	NA
UHGV-0069904_1	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0069904_1	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0069904_1	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0069904_1	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0069904_2	KOfam	K14059	int; integrase	NA
UHGV-0069904_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0069904_2	UniRef90	UniRef90_R6MY37	Putative integrase	NA
UHGV-0069904_2	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0069904_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0069904_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069904_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069904_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0069904_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0069904_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0069904_3	UniRef90	UniRef90_A0A416D685	Helix-turn-helix domain-containing protein	NA
UHGV-0069904_3	eggNOG-mapper	1121947.AUHK01000002_gene902	Peptidase S24-like	NA
UHGV-0069904_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0069904_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0069904_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0069904_4	UniRef90	UniRef90_R6NKY9	Prophage pi2 protein 05	NA
UHGV-0069904_4	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0069904_4	Pfam	PF05339	NA	DUF739
UHGV-0069904_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0069904_4	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0069904_7	PHROG	phrog_3240	NA	unknown function
UHGV-0069904_8	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0069904_8	UniRef90	UniRef90_UPI00148CD1FB	aspartate ammonia-lyase	NA
UHGV-0069904_8	eggNOG-mapper	1118063.I7I4C8_9CAUD	NA	NA
UHGV-0069904_8	Pfam	PF11195	NA	DUF2829
UHGV-0069904_8	Structural annotation	PF11195	NA	NA
UHGV-0069904_12	PHROG	phrog_28990	NA	unknown function
UHGV-0069904_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0069904_13	UniRef90	UniRef90_R6MCS5	Siphovirus family protein	NA
UHGV-0069904_13	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0069904_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0069904_13	Structural annotation	PF05565	NA	NA
UHGV-0069904_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069904_14	UniRef90	UniRef90_UPI000C080C89	ATP-binding protein	NA
UHGV-0069904_14	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0069904_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0069904_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0069904_15	PHROG	phrog_18107	NA	unknown function
UHGV-0069904_15	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0069904_15	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0069904_15	Pfam	PF05037	NA	DUF669
UHGV-0069904_15	Structural annotation	PF05037	NA	NA
UHGV-0069904_16	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0069904_16	UniRef90	UniRef90_A0A1C6FXN2	Superfamily II helicase and inactivated derivatives	NA
UHGV-0069904_16	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0069904_16	Pfam	PF06048	NA	DUF927
UHGV-0069904_16	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0069904_16	COG	COG5519	NA	NA
UHGV-0069904_16	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0069904_17	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0069904_17	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0069904_17	UniRef90	UniRef90_A0A416CVQ0	ATP-dependent helicase	NA
UHGV-0069904_17	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0069904_17	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0069904_17	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0069904_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0069904_17	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0069904_17	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0069904_18	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069904_18	UniRef90	UniRef90_R6MU33	VRR-NUC domain-containing protein	NA
UHGV-0069904_18	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-0069904_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0069904_18	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0069904_18	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0069904_20	PHROG	phrog_6802	NA	unknown function
UHGV-0069904_20	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0069904_21	PHROG	phrog_8684	NA	unknown function
UHGV-0069904_21	UniRef90	UniRef90_A0A1C5RI52	YopX protein	NA
UHGV-0069904_21	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0069904_21	Pfam	PF09643	YopX protein	YopX
UHGV-0069904_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0069904_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0069904_22	eggNOG-mapper	1235802.C823_04654	NA	NA
UHGV-0069904_24	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0069904_25	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0069904_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0069904_25	UniRef90	UniRef90_UPI001F423F52	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0069904_25	eggNOG-mapper	1121115.AXVN01000007_gene3560	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0069904_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0069904_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0069904_26	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0069904_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0069904_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0069904_28	UniRef90	UniRef90_A0A3M0SXP1	NA	NA
UHGV-0069904_28	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0069904_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0069904_28	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0069904_29	PHROG	phrog_21498	NA	unknown function
UHGV-0069904_29	UniRef90	UniRef90_A0A250ETS9	Chromosome partitioning protein ParB	NA
UHGV-0069904_29	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0069904_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0069904_29	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0069904_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0069904_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0069904_30	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-0069904_30	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0069904_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0069904_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0069904_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0069904_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069904_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0069904_31	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0069904_31	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0069904_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0069904_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0069904_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069904_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069904_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069904_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0069904_32	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0069904_32	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0069904_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069904_32	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0069904_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0069904_33	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0069904_33	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0069904_33	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0069904_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0069904_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0069904_33	COG	COG2369	NA	NA
UHGV-0069904_33	Structural annotation	PF04233, PF00583, TIGR01641, NF000487, COG1246, COG2369	NA	NA
UHGV-0069904_35	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0069904_35	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0069904_35	Pfam	PF14265	NA	DUF4355
UHGV-0069904_35	Structural annotation	PF14265	NA	NA
UHGV-0069904_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0069904_36	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069904_36	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0069904_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0069904_36	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0069904_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0069904_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069904_36	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0069904_37	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0069904_37	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0069904_37	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0069904_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0069904_37	Structural annotation	PF05135	NA	NA
UHGV-0069904_38	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0069904_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0069904_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0069904_39	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-0069904_39	eggNOG-mapper	1118063.I7ILS4_9CAUD	exonuclease activity	NA
UHGV-0069904_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0069904_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0069904_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0069904_40	PHROG	phrog_78	tail terminator	connector
UHGV-0069904_40	Structural annotation	PF05657	NA	NA
UHGV-0069904_41	PHROG	phrog_88	major tail protein	tail
UHGV-0069904_41	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0069904_41	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-0069904_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0069904_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0069904_44	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0069904_44	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0069904_44	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0069904_44	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0069904_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0069904_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0069904_44	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0069904_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0069904_45	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-0069904_45	eggNOG-mapper	203119.Cthe_1708	Phage tail protein	NA
UHGV-0069904_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0069904_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0069904_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0069904_45	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0069904_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0069904_46	UniRef90	UniRef90_A0A1C6E329	Phage-related protein	NA
UHGV-0069904_46	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-0069904_46	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0069904_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0069904_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0069904_46	COG	COG4926	Phage-related protein	NA
UHGV-0069904_46	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0069904_47	eggNOG-mapper	1033744.CAEL01000015_gene50	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0069904_47	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0069904_48	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0069904_48	UniRef90	UniRef90_UPI001F2ED7B7	Abi family protein	NA
UHGV-0069904_48	eggNOG-mapper	469617.FUAG_02687	Abi-like protein	NA
UHGV-0069904_48	PADLOC	AbiD	AbiD	Abi
UHGV-0069904_48	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0069904_48	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0069904_48	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0069904_49	UniRef90	UniRef90_A0A1C6CU08	Pectate_lyase_3 domain-containing protein	NA
UHGV-0069904_49	eggNOG-mapper	1120998.AUFC01000016_gene5	alginic acid biosynthetic process	NA
UHGV-0069904_49	COG	COG1511	NA	NA
UHGV-0069904_52	PHROG	phrog_937	hemolysin	other
UHGV-0069904_52	eggNOG-mapper	693746.OBV_19000	NA	NA